View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_high_3 (Length: 401)
Name: NF6982_high_3
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 4 - 380
Target Start/End: Original strand, 17882042 - 17882418
Alignment:
| Q |
4 |
gatggacatcataaaaacaaagaagcaaagtcaaaagtatataccgcctccttaaagcgtgtgtgtacatttgaaaaattgcacagcataagaaagatta |
103 |
Q |
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| T |
17882042 |
gatggacttcataaaaacaaagaagcaaagtcaaaagtatataccacatccttaaagcatgtgtgtacatttgaaaaattgcacagcatatgaaagatta |
17882141 |
T |
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| Q |
104 |
cacaccatattggccaattaccaacttaagacgaaatacaaggaaacagtgcaaataaatgtaccatgtaatggtggaaaataaagtaaacttatctagg |
203 |
Q |
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| T |
17882142 |
cacaccatattggccaattaccaacttaagacgaaatacaaggaaacagtgcaaataaatgtaccatgtaatggtggaaaataaagtaaacttatctagg |
17882241 |
T |
|
| Q |
204 |
aacaaaatatgaggaaagcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagcatcccatcctattgtataacaatgaa |
303 |
Q |
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| T |
17882242 |
aacaaaatatgaggaaagcagtctacctgtctggagcagtagaaaacaattctttaagttcacagggttggagcatcccatcctattgtataacaatgaa |
17882341 |
T |
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| Q |
304 |
gtcagttgagaaaatgtccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtcattagcacagat |
380 |
Q |
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| T |
17882342 |
gtcagttgagaaaatgtccaaaaatgattggggagcagcatgaaaaagtgaaattattcagggtcattagcacagat |
17882418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 14774988 - 14775044
Alignment:
| Q |
321 |
ccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtcattagcaca |
377 |
Q |
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| T |
14774988 |
ccaaaaatgattgggaagcagcatgaaaatgtgaaattagtcagggtcatttgcaca |
14775044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 14774792 - 14774879
Alignment:
| Q |
16 |
aaaaacaaagaagcaaagtcaaaagtatataccgcctccttaaagcgtgtgtgtacatttgaaaaattgcacagcataagaaagattaca |
105 |
Q |
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| T |
14774792 |
aaaaacaatgaagaaaagtcacaagtata--ccacatccttcaagcatgtatgtacatttgaataattgcacgacataagaaagattaca |
14774879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 15016879 - 15016961
Alignment:
| Q |
23 |
aagaagcaaagtcaaaagtatataccgcctccttaaagcgtgtgtgtacatttgaaaaattgcacagcataagaaagattaca |
105 |
Q |
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| T |
15016879 |
aagaagcaaagtcagcagtataaaccacatccttaaaaattgaatgtacatttgaaaaattccacaacataagaaagattaca |
15016961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 15049735 - 15049793
Alignment:
| Q |
220 |
agcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagca |
278 |
Q |
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| T |
15049735 |
agcaatctacctttccggagcagtagaaaacagttcttcaagttcacggggttgcagca |
15049793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 36874788 - 36874722
Alignment:
| Q |
302 |
aagtcagttgagaaaatgtccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtca |
369 |
Q |
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| T |
36874788 |
aagtcagtagtgaaaatgtctgaaaatgattggggagcagca-agaaaagtaaaattattcagggtca |
36874722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 36874912 - 36874833
Alignment:
| Q |
209 |
aatatgaggaaagcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagcatcccatccta |
288 |
Q |
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| T |
36874912 |
aatattaggatagcaatctacctttccggggcagtggaaaacaattcttcaagttcacggggacgcaacatcccatccta |
36874833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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