View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_high_8 (Length: 298)
Name: NF6982_high_8
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 5484635 - 5484783
Alignment:
| Q |
4 |
gcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484635 |
gcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttg |
5484734 |
T |
|
| Q |
104 |
tcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484735 |
tcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata |
5484783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 5500637 - 5500861
Alignment:
| Q |
4 |
gcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttg |
103 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5500637 |
gcttcaatatcttggcatggattttatcaacatcaccaactcgtcccgtgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttg |
5500736 |
T |
|
| Q |
104 |
tcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcctcat |
203 |
Q |
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|||| ||||| ||||||||| || || || ||||||||||| ||||||||||||| ||||| |||| ||||| ||||||||| |||||||||| | |
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| T |
5500737 |
tccttttgcagtcttgcttcactccctccagcttcaccatttctaaatattacatctctttccaggctttatctcactggaaatctttttaattccacta |
5500836 |
T |
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| Q |
204 |
taccttcttggatgttcaacatgag |
228 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
5500837 |
taccttcttggctgttcaacatgag |
5500861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 143 - 289
Target Start/End: Original strand, 5485000 - 5485145
Alignment:
| Q |
143 |
tttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcctcattaccttcttggatgttcaacatgagtacccttacaaaac |
242 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5485000 |
tttttaaatattacatcactttatgtg-ttgatctctctggaaatccttttaattcctcattaccttcttggatgttcaacatgagtacccttacaaaac |
5485098 |
T |
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| Q |
243 |
ttcgtctttccgattcatctctaataggtatcgttccttatattctt |
289 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
5485099 |
ttcgtctttccgattcatctctaataggtatcattccttctattctt |
5485145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 5495611 - 5495882
Alignment:
| Q |
13 |
tcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttgtcctcttgc |
112 |
Q |
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|||| ||||| ||| ||| || || |||| |||||||||||||| ||||| | || |||||||||| |||||||||||||||||||||| | |||| |
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| T |
5495611 |
tcttagcatgaattatgtaaatattaccacctcgccccatgagtggtttcaaactatgaataagataccatctctattagagttgcatttaatgtattgc |
5495710 |
T |
|
| Q |
113 |
aatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcctcattaccttctt |
212 |
Q |
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|||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
5495711 |
aatcttgcttttctcccaccatcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcatctataccttctt |
5495810 |
T |
|
| Q |
213 |
ggatgttcaacatgagtacccttacaaaacttcgtctttccga---ttcatctctaataggtatcgttcctt |
281 |
Q |
| |
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|| |||| ||||| |||||||||||| | ||| ||||||| || ||||||||||| ||| ||||||||| |
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| T |
5495811 |
ggttgtttaacattagtacccttacataccttagtctttctgaatcatcatctctaatcggtctcgttcctt |
5495882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 5489827 - 5490050
Alignment:
| Q |
11 |
tatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttgtcctctt |
110 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||||||| ||||||||||| | || ||||||||||||||||| | | ||||| ||||||||| | |||| |
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| T |
5489827 |
tatcttgacatgaattttgtaaacattaccaactcgccacatgagttgttccaagttgtgaataagatgtcatatttgttagaattgcatttggcttctt |
5489926 |
T |
|
| Q |
111 |
gcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcctcattaccttc |
210 |
Q |
| |
|
||||||||| |||| || || || ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
5489927 |
gcaatcttggcgctctccctccatcgtcaccatttttaaattctacatcactttctgtgcttgatctctctggaaatcattttaattcctcaataccttc |
5490026 |
T |
|
| Q |
211 |
ttggatgttcaacatgagtaccct |
234 |
Q |
| |
|
|||||||||||||||||| ||||| |
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| T |
5490027 |
ttggatgttcaacatgagcaccct |
5490050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 5476696 - 5476965
Alignment:
| Q |
5 |
cttcactatcttggcatggattttgtcaacatcaccaactcgcccc---atgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatt |
101 |
Q |
| |
|
||||| |||||||||||||||| |||||| | ||||||||| ||| | |||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
5476696 |
cttcaatatcttggcatggattatgtcaatgttaccaactcgtccctctagttgttgtttcgagctgtgaaaaagatgtcttctctgttagagttgcatt |
5476795 |
T |
|
| Q |
102 |
tgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcctc |
201 |
Q |
| |
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|| | |||||| || ||||||| || || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
5476796 |
tggcttcttgcggaatttcttctctccctccaacttcgccatttttaaatattacaccactttctgtgcttgatctctctggaaatcctttaaatacctc |
5476895 |
T |
|
| Q |
202 |
attaccttcttggatgttcaacatgagtacccttacaaaacttcgtctttccgattcatctctaataggt |
271 |
Q |
| |
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| | ||||||||| ||||||||||||||||||||||| |||| ||||| || ||||||||||||||| |
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| T |
5476896 |
aatgccttcttggctgttcaacatgagtacccttacagaactcaatctttacgcatcatctctaataggt |
5476965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 5467063 - 5467330
Alignment:
| Q |
4 |
gcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttg |
103 |
Q |
| |
|
|||||| |||||| |||||| ||||| |||||||| |||| |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |
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|
| T |
5467063 |
gcttcaatatcttaacatggactttgttaacatcacagactcaccccgtgagttgtttcgagctgttaataagatgccatctctgttagagttgcatttg |
5467162 |
T |
|
| Q |
104 |
tcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcctcat |
203 |
Q |
| |
|
|||| ||||||||||||| | || || || |||||||| |||||||||||| ||||||||| ||||||||| |||||| ||| || | |||||||| |
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| T |
5467163 |
tccttttgcaatcttgctgcactccctccatcttcaccctttttaaatatttcatcactttatgtgcttgacctctctaagaatatttatgattcctcaa |
5467262 |
T |
|
| Q |
204 |
taccttcttggatgttcaacatgagtacccttacaaaacttcgtctttccgattcatctctaataggt |
271 |
Q |
| |
|
||||| | ||| |||||||||| |||||||| ||| ||||| |||||| |||||||| ||| |||| |
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|
| T |
5467263 |
tacctccctggttgttcaacatcagtaccctcacacaacttattctttcttattcatctgtaagaggt |
5467330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 5481771 - 5481987
Alignment:
| Q |
4 |
gcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtcatctctattagagttgcatttg |
103 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| | | |||||||||||| |||||||||||| |||||||||||||||| ||| | ||||||||||| ||| |
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|
| T |
5481771 |
gcttcaatatcttggcatggattttgccaaatttatcaactcgccccacgagttgtttcgatctgtgaataagatgtcttctatgttagagttgcacttg |
5481870 |
T |
|
| Q |
104 |
tcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcctcat |
203 |
Q |
| |
|
|||||||| ||||| || || | |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
5481871 |
tcctcttg-----ttgct---ctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaa |
5481962 |
T |
|
| Q |
204 |
taccttcttggatgttcaacatgag |
228 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
5481963 |
taccttcttggatattcaacatgag |
5481987 |
T |
|
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