View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_low_1 (Length: 653)
Name: NF6982_low_1
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 22 - 514
Target Start/End: Original strand, 45108337 - 45108829
Alignment:
| Q |
22 |
gtcccctgtagttacggcctatggtttggctgtgagcatattttatggggtttgtgcccttgataattcatgtgctatgttagtgagaagccgttgttgt |
121 |
Q |
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| T |
45108337 |
gtcccctgttgttacggcctatggtttggctgtgagcatattttatggggtttgtgcccttgataattcatgtgctatgttagtgagaagccgttgttgt |
45108436 |
T |
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| Q |
122 |
atcctgttagctgtgaggccaagtataccgagtaattagacgtgaggcgcaccaataataatagtaatatctgtaactgttattagccttagcaatcacc |
221 |
Q |
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| T |
45108437 |
attctgttagctgtgaggccaagtataccgagtaattagacgtgaggcgcaccaataataatagtaatatctgtaactgttattagccttagcaatcacc |
45108536 |
T |
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| Q |
222 |
atatatagccatagtggtgtcttgatttatctacatatacacctttcatattctacaggatgcagattatgtagtgaactgaaattgagactctctacac |
321 |
Q |
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| T |
45108537 |
atatatagccatagtggtgtcttgatttatctatatataaacctttcatattctacaggatgcagattatgtagtgaactgaaattgagactctctacac |
45108636 |
T |
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| Q |
322 |
acgaatgtgcagtatgatgatgaagagacacacaataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttg |
421 |
Q |
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| T |
45108637 |
acgaatgtgcagtatgatgatgaagagacacacaataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttg |
45108736 |
T |
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| Q |
422 |
cctactaagatttacaaaaagatctgggttcccatgctacaaaacaagttcaattctacatacttcagagggcaaggtaattacgtgtttgtg |
514 |
Q |
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| T |
45108737 |
cctactaagatttacaaaaagatctgggctcccatgctacaaaacaagttcaattctacatacttcagagggcaaggtaattacgtgtttgtg |
45108829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 45108893 - 45108950
Alignment:
| Q |
580 |
cagtagttcttaactttattagggataaatctcctgtttttcacattccctatgatgt |
637 |
Q |
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| T |
45108893 |
cagtagttcttaactttattagggataaatctcctgtttttcacattccctatgatgt |
45108950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 333 - 499
Target Start/End: Original strand, 45125672 - 45125832
Alignment:
| Q |
333 |
gtatgatgatgaagagacacacaataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttgcctactaagat |
432 |
Q |
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| T |
45125672 |
gtatgatgatgaagagccacaca------ttcctaaggatcatttttctttttatgtttcttggatggctaacagtttggatcttgttgcccacaaaggt |
45125765 |
T |
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| Q |
433 |
ttacaaaaagatctgggttcccatgctacaaaacaagttcaattctacatacttcagagggcaaggt |
499 |
Q |
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| T |
45125766 |
ctacaaaaacacatggactcccaagctagaaatcaagctcaattctacatactttagagagcaaggt |
45125832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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