View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_low_11 (Length: 312)
Name: NF6982_low_11
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_11 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 14229030 - 14229219
Alignment:
| Q |
19 |
catagttctgtggtcataaaatgataaaactgnnnnnnnnnccttccttaaacacaaactaatgatataaattgaaaagagtataaagatagtctaatat |
118 |
Q |
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| T |
14229030 |
catagttctgtggtcataaaatgataaaactgtttttttttt-ttccttaaagacaaactaatgatataaattgaaaagagtataaagatactctaatat |
14229128 |
T |
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| Q |
119 |
aaga----aaagtatggagtaattttgtgtggcctttgtgtgttttaacggtcataaagtctaatttctatgtatgttagagttctcaata |
205 |
Q |
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| T |
14229129 |
aagaaagaaaagtatggagtaattttgtgtggcctttttgtgttttgagggtcataaagtataatttctatgtaggttagagttctcaata |
14229219 |
T |
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 47656581 - 47656504
Alignment:
| Q |
235 |
ctgcacgaacccacacgaacaagctttcaacacatctgtgcgtacacgtctcttggccagcaccttcataaaagccgc |
312 |
Q |
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| T |
47656581 |
ctgcacgaacccacacgaacaagctttcaacacatctgtgcttacacgtctcttgaccagcaccttcataaaagccgc |
47656504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 54923016 - 54922957
Alignment:
| Q |
248 |
cacgaacaagctttcaacacatctgtgcgtacacgtctcttggccagcaccttcataaaag |
308 |
Q |
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| T |
54923016 |
cacgaacaagctt-caacacatctgtgcgtacacgtctcttggctagcaccgtcataaaag |
54922957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 11441818 - 11441893
Alignment:
| Q |
237 |
gcacgaacccacacgaacaagctttcaacacatctgtgcgtacacgtctcttggccagcaccttcataaaagccgc |
312 |
Q |
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| T |
11441818 |
gcacgaacccacacgaacaagctttcaacacatctgtgtttacacgtctcttggccagcaccttcataaaagccgc |
11441893 |
T |
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