View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6982_low_14 (Length: 294)
Name: NF6982_low_14
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 10562681 - 10562925
Alignment:
| Q |
19 |
caacaaagtagatcatgatgaagctatagtgatgacattgccaccaccaattaagaaggatgaggtgaataagaatgacatggaattgcaatcctatatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10562681 |
caacaaagtagatcatgatgaagctatagtgatgacattgccaccaccaattaagaaggatgaggtgaataagaatgacatggaattgcaatcctatatg |
10562780 |
T |
|
| Q |
119 |
cacgaatttcctaaaccctagttttttctcattcatccacgacagatgagtgatttatggtcgtta-tttttcaccttaaatcacctctctcaagttttt |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
10562781 |
cacgaatttcctaaaccctaattttttctcattcatccacgatatatgagtgatttatggtcgttattttttcacctcaaatcacctctctcaagttttt |
10562880 |
T |
|
| Q |
218 |
ctccttctagtttattttaataagtgattttcacacacatattag |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10562881 |
ctccttctagtttattttaataagtgattttcacacacatcttag |
10562925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 45937243 - 45937285
Alignment:
| Q |
33 |
atgatgaagctatagtgatgacattgccaccaccaattaagaa |
75 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
45937243 |
atgatgaagctatagtgatgccattgccaccatcaattaagaa |
45937285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 3673580 - 3673701
Alignment:
| Q |
131 |
aaaccctagttttttctcattcatccacgacagatgagtgatttatggtcgttatttttcaccttaaatcacctctctcaa--gtttttctccttctagt |
228 |
Q |
| |
|
|||||||| ||| |||||||| |||||| | ||| | |||||||| |||| |||||| ||| |||||||| |||| || ||||||||||||| | |
|
|
| T |
3673580 |
aaaccctactttcttctcatttatccaccaaagaggggtgatttagggtca--atttttgaccccaaatcacccctctaaatcgtttttctccttccttt |
3673677 |
T |
|
| Q |
229 |
ttattttaataagtgattttcaca |
252 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
3673678 |
ttatttaaataagtgattttcaca |
3673701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 8957249 - 8957289
Alignment:
| Q |
212 |
gtttttctccttctagtttattttaataagtgattttcaca |
252 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8957249 |
gtttttctccttcttttttatttaaataagtgattttcaca |
8957289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 14741472 - 14741428
Alignment:
| Q |
130 |
taaaccctagttttttctcattcatccacgacagatgagtgattt |
174 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
14741472 |
taaaccctagttttttctccttcatccatcaaagatgagtgattt |
14741428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University