View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_low_15 (Length: 294)
Name: NF6982_low_15
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 55910395 - 55910657
Alignment:
| Q |
18 |
agtatttcacatctaaaagccatggttaaatggagaaatttttgcttcatttgcttgcttgtatataaaa-aagaggtgacaagaaacaaagccttgtat |
116 |
Q |
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| T |
55910395 |
agtatttcacatctaaaagccatggttaaatggagaaatttttgcttcatttgcttgcttgtctataaaagaagaggtgacaagaaacaaagccttgtat |
55910494 |
T |
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| Q |
117 |
ccattttcattttcccatcaaagttgtacattattcacatttgcatcattttattcccctttaaccaatttatccactgtttcaaatttgatggggggct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
55910495 |
ccattttcattttcccatcaaagttgtacattattcacatttgcatcattttattcccctttaaccaatttgtccactgtttcaaatttgatggggggtt |
55910594 |
T |
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| Q |
217 |
taggaatgaggttcttattttagcaggtgtatcagggagtaaaagtttgacagctttattctc |
279 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55910595 |
taggaatgaagctcttattttagcaggtgtatcagggagtaaaagtttgacagctttattctc |
55910657 |
T |
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