View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_low_16 (Length: 277)
Name: NF6982_low_16
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 29335108 - 29335375
Alignment:
| Q |
10 |
aagaatatcggatgaccgatagatccttgtttgaatcttacattgctttttatctcaggactaggccttattgttggcggcgaaaaaccatggtgtagtg |
109 |
Q |
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| T |
29335108 |
aagaatatcggatgaccgatagatccttgtttgaatcttacattgctttttatctcaggactaggccttattgttggcggcgaaaaaccatggtgtagtg |
29335207 |
T |
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| Q |
110 |
aagagtgtgtctttatacctaatgccctgaaagaaccattgagaggcagagatgcaagacatgcatacctctcagtgaatagtccaattcgcatagctcg |
209 |
Q |
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| T |
29335208 |
aagagtgtgtctttatacctaatgccctgaaagaaccattgagaggcagagatgcaagacatgcatacctctcagtgaatagtccaattcgcatagctcg |
29335307 |
T |
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| Q |
210 |
ctttgctaatgttctttctctcttgtgtgcattttgatgaccaccaagtgcctgagagctgtaaaatt |
277 |
Q |
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| T |
29335308 |
ctttgctaatgttctttctctcttgtgtgcattttgatgaccaccaagtgcctgagagctgtaaaatt |
29335375 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 33032407 - 33032613
Alignment:
| Q |
72 |
aggccttattgttggcggcgaaaaaccatggtgtagtgaagagtgtgtctttatacctaatgccctgaaagaaccattgagaggcagagatgcaagacat |
171 |
Q |
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| T |
33032407 |
aggcctaattgttgttggtgagaaaccatagtgcattgaagagtgtgcttttatccctaatgacctaaaagaaccatgcaaaggtaaagatgctaaacta |
33032506 |
T |
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| Q |
172 |
gcat---acctctcagtgaatagtccaattcgcatagctcgctttgctaatgttctttctctcttgtgtgcattttgatgaccaccaagtgcctgagagc |
268 |
Q |
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| T |
33032507 |
gcattatacctatcagaaaacattcccattctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaac |
33032606 |
T |
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| Q |
269 |
tgtaaaa |
275 |
Q |
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| T |
33032607 |
tgaaaaa |
33032613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 45217873 - 45217916
Alignment:
| Q |
220 |
gttctttctctcttgtgtgcattttgatgaccaccaagtgcctg |
263 |
Q |
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| T |
45217873 |
gttctttctcttttgtgtgcattttggtgtccaccaagtgcctg |
45217916 |
T |
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