View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_low_6 (Length: 396)
Name: NF6982_low_6
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 50275537 - 50275148
Alignment:
| Q |
1 |
gcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggcatggaagctttgcaacaagctctttcagagacactttcctcca |
100 |
Q |
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| T |
50275537 |
gcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctcca |
50275438 |
T |
|
| Q |
101 |
cgtccactggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaa |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50275437 |
cgtccactggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaa |
50275338 |
T |
|
| Q |
201 |
ttaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatct |
300 |
Q |
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| T |
50275337 |
ttaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatct |
50275238 |
T |
|
| Q |
301 |
tgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatctcac |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50275237 |
tgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcac |
50275148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 50279561 - 50279172
Alignment:
| Q |
1 |
gcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggcatggaagctttgcaacaagctctttcagagacactttcctcca |
100 |
Q |
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| T |
50279561 |
gcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctcca |
50279462 |
T |
|
| Q |
101 |
cgtccactggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaa |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50279461 |
cgtccactggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaa |
50279362 |
T |
|
| Q |
201 |
ttaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatct |
300 |
Q |
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| T |
50279361 |
ttaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatct |
50279262 |
T |
|
| Q |
301 |
tgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatctcac |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50279261 |
tgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcac |
50279172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 22610624 - 22610691
Alignment:
| Q |
31 |
caggctgaagatgcattatctcaaggcatggaagctttgcaacaagctctttcagagacactttcctc |
98 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||| ||| ||||| |||||| ||| ||||||||||| |
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| T |
22610624 |
caggctgaggatgctttatctcacggcatggaagcattgaaacaatctcttttagaaacactttcctc |
22610691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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