View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_low_7 (Length: 380)
Name: NF6982_low_7
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 20164782 - 20165003
Alignment:
| Q |
13 |
tgtggtatgaaggttttggttggtatttataggacaaaacatggagatgattttccaaatttgcccttgatacttttcaaaatgacaagtttgtccctac |
112 |
Q |
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| T |
20164782 |
tgtggtatgaaggttttggttggtatttataggacaaaacatggagatgattttccaaatttacccttgatacttttcaaaatgacaagtttgtccctac |
20164881 |
T |
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| Q |
113 |
agaaaattttggtttgac------tcgtgtgttagactcagtgattcagcgagtgtcggtgg---------------aaaacagcccataagcgcaaaat |
191 |
Q |
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| T |
20164882 |
agaaaaatttggtttgactcgtgatcgtgtgttagactcagtggttcagtgggtgtcggtggaaaacatcaaaatcaaaaacagcccataagcgcaaaat |
20164981 |
T |
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| Q |
192 |
cagtgttattcgagaaagtgcg |
213 |
Q |
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| T |
20164982 |
cagtgttattcgagaaagtgcg |
20165003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 239 - 364
Target Start/End: Original strand, 20165030 - 20165155
Alignment:
| Q |
239 |
gacaatggaagcaatgaagcagaagatgatagtggaattgattgtattgttgatgatggtgtttgttttgagtgtaagtggttggaccggtgaaattcgt |
338 |
Q |
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| T |
20165030 |
gacaatggaagcaatgaagcagaagatgatagtggaattgattgtattgttgatgatggtgtttgttttgagtgtaagtggttggactggtgaaattcgt |
20165129 |
T |
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| Q |
339 |
ggaagagttgtttgtgatgtttgtgg |
364 |
Q |
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| T |
20165130 |
ggaagagttgtttgtgatgtttgtgg |
20165155 |
T |
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