View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6982_low_9 (Length: 338)
Name: NF6982_low_9
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_low_9 |
 | |
|
| [»] scaffold0434 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 23587195 - 23587513
Alignment:
| Q |
9 |
aacctgtgcatatgcaacatcagcagcaatcttgatagttgtttcatcatcagcaaccatgggatccttctcagaagtgccaacattaggtttgacaacg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587195 |
aacctgtgcatatgcaacatcagcagcaatcttgatagttgtttcatcatcagcaaccatgggatccttctcagaagtgccaacattaggtttgacaacg |
23587294 |
T |
|
| Q |
109 |
gtggagatgaaaggattctccttttcatacaaatcacccatgctcaacgatgtctttgattcaccccttttcgttttaggccccgttttcttcttcgaag |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587295 |
gtggagatgaaagtattctccttttcatacaaatcacccatgctcaacggtgtctttgattcaccccttttcgttttaggccccgttttcttcttcgaag |
23587394 |
T |
|
| Q |
209 |
tagattttgttgcggttttcttcttagtttttagggaagaaacctttgtgatgggttcacccattttaggaattgaagaactagtttcacgacgttcgga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587395 |
cagattttgttgcggttttcttcttagttttttgggaagaaacctttgtgatgggttcacccattttaggaattgaagaactagtttcacgacgttcgga |
23587494 |
T |
|
| Q |
309 |
gacagagttttctttgatg |
327 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23587495 |
gacagagttttctttgatg |
23587513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 19897371 - 19897213
Alignment:
| Q |
109 |
gtggagatgaaaggattctccttttcatacaaatcacccatgctcaacgatgtctttgattcaccccttttcgttttaggccccgttttcttcttcgaag |
208 |
Q |
| |
|
||||| || |||||||| |||||||| |||| ||| |||| ||||| | |||| |||||||| ||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
19897371 |
gtggatataaaaggattttccttttcgtacagatctgccatactcaatggtgtccttgattcatccctttttgttttaggaccagttttcttctttgaag |
19897272 |
T |
|
| Q |
209 |
tagattttgttgcggttttcttcttagtttttagggaagaaacctttgtgatgggttca |
267 |
Q |
| |
|
| | |||||||| ||||| |||| | |||| |||| |||||| || | ||||||||| |
|
|
| T |
19897271 |
caaactttgttgccattttcctcttggattttggggatgaaaccgtttttatgggttca |
19897213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 25801518 - 25801600
Alignment:
| Q |
121 |
ggattctccttttcatacaaatcacccatgctcaacgatgtctttgattcaccccttttcgttttaggccccgttttcttctt |
203 |
Q |
| |
|
||||| |||||||| || | |||| |||| ||||| | |||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
25801518 |
ggattttccttttcgtatagatcaaccatactcaaaggcgtctttgattcacccctttttgttttaggagcctttttcttctt |
25801600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 267
Target Start/End: Complemental strand, 18038079 - 18037934
Alignment:
| Q |
121 |
ggattctccttttcatacaaatcacccatgctcaacgatgtctttgattcaccccttttcgttttaggccccgttttcttcttcgaagtagattttgttg |
220 |
Q |
| |
|
||||| ||||||||||| | |||| |||| ||||||| ||||||||||||| |||||||||||||||| || |||||||||| || || || | | |
|
|
| T |
18038079 |
ggattttccttttcatatagatcaaccatactcaacggtgtctttgattca-cccttttcgttttaggagcctttttcttctttgagaccgacttagacg |
18037981 |
T |
|
| Q |
221 |
cggttttcttcttagtttttagggaagaaacctttgtgatgggttca |
267 |
Q |
| |
|
|||| ||||||||| |||| | ||||||||| |||||||||||||| |
|
|
| T |
18037980 |
tggttatcttcttagattttggtgaagaaaccgttgtgatgggttca |
18037934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0434 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0434
Description:
Target: scaffold0434; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 12246 - 12356
Alignment:
| Q |
69 |
gggatccttctcagaagtgccaacattaggtttgacaacggtggagatgaaaggattctccttttcatacaaatcacccatgctcaacgatgtctttgat |
168 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| ||| | | |||||| || |||||||| |||| || ||||||||| | ||||||||| |
|
|
| T |
12246 |
gggatccttctcagaagtgccaacatttggttcgacaatggtaaataggaaagggttttccttttcgtacattccagccatgctcattggggtctttgat |
12345 |
T |
|
| Q |
169 |
tcacccctttt |
179 |
Q |
| |
|
||||||||||| |
|
|
| T |
12346 |
tcacccctttt |
12356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 53376 - 53219
Alignment:
| Q |
109 |
gtggagatgaaaggattctccttttcatacaaatcacccatgctcaacgatgtctttgattcaccccttttcgttttaggccccgttttcttcttcgaag |
208 |
Q |
| |
|
||||| || |||||||| |||||||| |||| ||| ||| | |||| | |||| || |||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
53376 |
gtggatataaaaggattttccttttcgtacagatctgccaag-tcaatggtgtccttaattcacccctttatgttttaggacccgttttcttctttgaag |
53278 |
T |
|
| Q |
209 |
tagattttgttgcggttttcttcttagtttttagggaagaaacctttgtgatgggttca |
267 |
Q |
| |
|
||| |||||||| ||||| ||| |||| |||| |||||| |||||||||||||| |
|
|
| T |
53277 |
cagactttgttgcaattttccccttgaattttggggatgaaaccattgtgatgggttca |
53219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 22482525 - 22482425
Alignment:
| Q |
167 |
attcaccccttttcgttttaggccccgttttcttcttcgaagtagattttgttgcggttttcttcttagtttttagggaagaaacctttgtgatgggttc |
266 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||| |||| ||| |||| || ||||| |||| | |||| |||| ||||| ||||||||||||| |
|
|
| T |
22482525 |
attcacccctttttgttttaagacccgttttcttctttgaagcagactttgccgcaattttcctcttggattttggggatgaaactgttgtgatgggttc |
22482426 |
T |
|
| Q |
267 |
a |
267 |
Q |
| |
|
| |
|
|
| T |
22482425 |
a |
22482425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University