View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6983_high_1 (Length: 673)
Name: NF6983_high_1
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6983_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 197 - 569
Target Start/End: Original strand, 19024082 - 19024446
Alignment:
| Q |
197 |
agtgttatttttccaagaggaaaaaatatgtcagtttctttgatgatagttaacaaaaaatcctatagttattatttttaccatggaacagaacacaaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19024082 |
agtgttatttttccaagaggaaaaaatatgttagtttctttgatgatagttaacaagaagtcctatagttattattgttaccatggaacagaacacaaac |
19024181 |
T |
|
| Q |
297 |
agagaatctaaagtgaaattcttaggagagatgattttgttaccacttcaagctctctcccaccaccgtgagtcagtcgccaacgttccaaagcccttta |
396 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
19024182 |
agagaatctaaagtgaaattcttaggggaggtgattgtgttaccacttcaagttctctcccaccaccgtgagtcagatatcaacgttccgaagcccttta |
19024281 |
T |
|
| Q |
397 |
cctcaaccgttgcttgaacttcaatattacacgtgctttagttgctgttgtagaatcaacttccttgcaactaataattnnnnnnntaaggaatcggaat |
496 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| || || |||||||| ||| |
|
|
| T |
19024282 |
cctcaaccgttg-ttgaacttcaatattacacatgctttagttgttgttgtagaatcaactcccttgcaacaaaaaa-------aataaggaatacaaat |
19024373 |
T |
|
| Q |
497 |
gaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataac |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
19024374 |
gaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataac |
19024446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 352 - 647
Target Start/End: Original strand, 24414033 - 24414321
Alignment:
| Q |
352 |
tctcccaccaccgtgagtcagtcgccaacgttccaaagccctttacctcaaccgttgcttgaacttcaatattacacgtgctttagttgctgttgtagaa |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
24414033 |
tctcccaccaccgtgagtcagtcgccaacgttccaaagccctttacctcaaccgttgcttcaacttcaatattagacgtgctttaattgctgttgtagaa |
24414132 |
T |
|
| Q |
452 |
tcaacttccttgcaactaataattnnnnnnntaaggaatcggaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttct |
551 |
Q |
| |
|
|||||| ||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24414133 |
tcaactcccttgcaacaaaaaa-------aataaggaatacaaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaattggttct |
24414225 |
T |
|
| Q |
552 |
tgcctattcaccaataacttcaataggatttaagaaatacgctccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24414226 |
tgcctattcaccaataacttcaataggatttaagaaatatgttccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
24414321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University