View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6983_high_19 (Length: 239)
Name: NF6983_high_19
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6983_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 45483742 - 45483556
Alignment:
| Q |
44 |
ttatgctccataagctagctatacgggtaaagaataaaatatgaatgattagatgacactttttatagtgcacgtgattttatgatatcaaagctcattt |
143 |
Q |
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| T |
45483742 |
ttatgctccataagctagctatacgggtaaagaataaaatatgaataattagatgacactttttatagtgcacgtgattttatgatatcaaagctcattt |
45483643 |
T |
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| Q |
144 |
cactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatcttat |
230 |
Q |
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| T |
45483642 |
cactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatcttat |
45483556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 29502232 - 29502151
Alignment:
| Q |
147 |
taggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
228 |
Q |
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| T |
29502232 |
taggatcagtagcttgcaactcaacttgtatcccatcaagctcccttttgaacctatctttggagctagcataaatcatctt |
29502151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 40864800 - 40864894
Alignment:
| Q |
134 |
aagctcatttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
228 |
Q |
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| T |
40864800 |
aagctcatctcacttggatcagttgcttgcagttcaacttgaatgccatccaattctctcttgaatctatccttggaacttgcatacaccatctt |
40864894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 36528992 - 36529073
Alignment:
| Q |
147 |
taggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
228 |
Q |
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| T |
36528992 |
taggatcagttgcttgcaactcaatctgaataccatcaagctctctcttgaatctatctttggagcttgcataaatcatctt |
36529073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 2791194 - 2791100
Alignment:
| Q |
134 |
aagctcatttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
228 |
Q |
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| T |
2791194 |
aagctcatctcacttggatcagttgcttggagttcaacttgaatgccatccaactccctcttgaatctatccttagaacttgcatacaccatctt |
2791100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 10635576 - 10635487
Alignment:
| Q |
139 |
catttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
228 |
Q |
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||||||| ||||||| ||||| |||||||| | |||||| ||||| || ||||||||||| || || |||||||| ||||| | |||||| |
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| T |
10635576 |
catttcagtaggatcagttgcctgcaactctatttgaattccatccagctccctcttgaacctttctttggtgcttgcataaatcatctt |
10635487 |
T |
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