View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6983_low_12 (Length: 363)

Name: NF6983_low_12
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6983_low_12
NF6983_low_12
[»] chr7 (14 HSPs)
chr7 (11-363)||(31438418-31438770)
chr7 (7-198)||(31615005-31615196)
chr7 (7-200)||(31576471-31576664)
chr7 (10-195)||(31608734-31608919)
chr7 (7-195)||(31595528-31595716)
chr7 (12-198)||(33304735-33304921)
chr7 (11-192)||(31572416-31572597)
chr7 (8-198)||(31585882-31586074)
chr7 (7-180)||(31605137-31605310)
chr7 (11-198)||(31618745-31618932)
chr7 (11-188)||(31532837-31533014)
chr7 (11-198)||(31541494-31541681)
chr7 (11-143)||(32351779-32351911)
chr7 (37-106)||(32351090-32351158)
[»] chr4 (1 HSPs)
chr4 (26-341)||(15062793-15063102)
[»] chr1 (1 HSPs)
chr1 (10-180)||(52173895-52174065)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 31438770 - 31438418
Alignment:
Q  11 tgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatta 110  Q
    ||||||||| |||| ||||| |||||||||||||| ||||||||||| | ||||||  ||||  ||| |||||||||||| || ||||| ||||||  ||    
T  31438770 tgtgatgttttacttatgcttgcaacttcatttataaattcttctccgtctcccttgcactcacttattactttcaccgcaacatgacggccatcaggta 31438671  T
Q  111 aacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactataccacttcggcac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  31438670 aacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcacttctgcataactataccgctttggcac 31438571  T
Q  211 cgacaaattaaatcttttaatgaaatcctcaatatgatcttggtcgatagatattcttgttttcttgaagatccttgtttgtactaaacttagatacccc 310  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31438570 cgacaaattatatctttttatgaaatcctcaatatgatcttggtcgatagatattcttgttttcttgaagatccttgtttgtactaaacttagatacccc 31438471  T
Q  311 tcacgtttacaaacaatcatcacaataaatagtacagctcctacaccaaatga 363  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31438470 tcacgtttacaaacaatcatcgcaataaatagtacagctcctacaccaaatga 31438418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 31615005 - 31615196
Alignment:
Q  7 catgtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatca 106  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  31615005 catgtgtaatgttcgactaatgctagcaacttcatttatgaattcttctccatttccctttgactcatttagtactttcaccgccacatgacgaccatca 31615104  T
Q  107 attaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 198  Q
    |||||||||||||||||||||||||||||||||||||| || || |||||||| || |||||||| | ||||||  |||||| |||||||||    
T  31615105 attaaacttgctttgtacacaacaccatatcctccttggcctaatttatctcggaaagagtttgttatcctttttacttctgtataactata 31615196  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 31576471 - 31576664
Alignment:
Q  7 catgtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatca 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || || |||| ||||||||||||||||||||||||||||    
T  31576471 catgtgtgatgttcgactaatgctagcaacttcatttatgaattcttctccatttcctttggattcatttattactttcaccgccacttgacgaccatca 31576570  T
Q  107 attaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactatacc 200  Q
    ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||||||||| ||||||  |||||| ||| |||||||    
T  31576571 attaaacttgctttgtaaacaacaccatatcctccttggcctaatttatcccgaaatgagtttgtgatcctttttacttctgtatatctatacc 31576664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 31608734 - 31608919
Alignment:
Q  10 gtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatt 109  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||  ||    
T  31608734 gtgtgatgttctactgatgctagcaacttcatttatgaactcttccccatttccttttgactcgtttattactttcactgccacttgacgaccatccgtt 31608833  T
Q  110 aaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataact 195  Q
    |||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| ||||||  |||||| ||||||    
T  31608834 aaacttgctttgtacacaacaccatatcctccatggcctaatttatctcgaaatgagtttgtgatcctttttacttctgtataact 31608919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 31595528 - 31595716
Alignment:
Q  7 catgtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatca 106  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||     
T  31595528 catgtgtgatgttctactgatgctagcaacttcatttatgaactcttccccatttccttttgactcgtttattactttcactgccacttgacgaccatcc 31595627  T
Q  107 attaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataact 195  Q
     |||||||||||||||||||||||||||||||||| || || || ||||| || ||||||||||||| ||||||  |||||||||||||    
T  31595628 gttaaacttgctttgtacacaacaccatatcctccgtggcctaatttatcacggaatgagtttgtgatcctttttacttctgcataact 31595716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 33304921 - 33304735
Alignment:
Q  12 gtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaattaa 111  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||  |||    
T  33304921 gtgacgttctactaatgctagcaacttcatttataaattcttctccatttcccttggactcttttattactttcactgccacttgacgaccatcaggtaa 33304822  T
Q  112 acttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 198  Q
     ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |  |||||  |||||||||| |||||    
T  33304821 gcttgctttgtacacaacaccatatcctccttgacctaatttatctcgaaatgagtttgtcattctttttacttctgcatatctata 33304735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 31572597 - 31572416
Alignment:
Q  11 tgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |||||| ||||||||||||| |||||||  ||    
T  31572597 tgtgatgttctactaatgctagcaacttcatttatgaattcttctccatctcccttagattcgtttattactttaaccgccacttgacaaccatcaggta 31572498  T
Q  111 aacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcata 192  Q
    |||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||| |  |||||| ||||||||||    
T  31572497 aacttgctttgtacacgacaccatatcctccttaacctaatttatctcgaaatgagtttgtcattcttttcacttctgcata 31572416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 31585882 - 31586074
Alignment:
Q  8 atgtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaa 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  || |||| ||||||||||||||| ||||||||||||     
T  31585882 atgtgtgatgttctactaatgctagaaacttcatttatgaattcttctccatttcccttagtttcatttattactttcaccgccacatgacgaccatcac 31585981  T
Q  108 ttaaacttgctttgtacacaacaccatatcctccttgacccaactta--tctcgaaatgagtttgtgaaccttttcgcttctgcataactata 198  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||| ||||||  ||||||  ||||||||    
T  31585982 ttaaacatgctttgtacacaacaccatatcctccttgacctaatttatctctcgaaatgagtttgtgatcctttttacttctgtgtaactata 31586074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 31605137 - 31605310
Alignment:
Q  7 catgtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatca 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || || |||| ||||||||||||||||||||||||||||    
T  31605137 catgtgtgatgttcgactaatgctagcaacttcatttatgaattcttctccatttcctttggattcatttattactttcaccgccacttgacgaccatca 31605236  T
Q  107 attaaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaacctttt 180  Q
    ||||||||||||||||| |||||||||||||||||||| || || ||| |||| || |||||||| | ||||||    
T  31605237 attaaacttgctttgtaaacaacaccatatcctccttggcctaatttaactcggaaagagtttgttatcctttt 31605310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 31618745 - 31618932
Alignment:
Q  11 tgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatta 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||| || |  ||    
T  31618745 tgtgatgtcctactaatgctagcaacttcatttatgaattcttctccatttccctttgtctcgcttattactttcactgccacttgacgactattatata 31618844  T
Q  111 aacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 198  Q
    ||||||||||||| ||||||||||| |||||||| || ||||| ||||||||  ||||||||| | ||||| ||||||||||||||||    
T  31618845 aacttgctttgtagacaacaccataccctccttggcctaacttttctcgaaaatagtttgtgatcattttcacttctgcataactata 31618932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 31532837 - 31533014
Alignment:
Q  11 tgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatta 110  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||  ||    
T  31532837 tgtgatgttctactaatgcttgcaacttcatttgtgaattcttctctatttccctttgactcgtttattactttcaccgccacttcacgaccatcaggta 31532936  T
Q  111 aacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctg 188  Q
    |  |||||||||| || | |||||||||||||||||||||  | ||||||||||||||||| |  |||||| ||||||    
T  31532937 agtttgctttgtaaaccataccatatcctccttgacccaatctgtctcgaaatgagtttgtcattcttttcacttctg 31533014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 31541494 - 31541681
Alignment:
Q  11 tgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatta 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||  | |||||| || |||||||||||||||  ||    
T  31541494 tgtgatgttctactaatgctagcaacttcatttatgaaatcttctccatttcccttagactcatttataattttcactgctacttgacgaccatcaggta 31541593  T
Q  111 aacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactata 198  Q
    |  |||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||| |   ||||| |||||||||| |||||    
T  31541594 agtttgctttgtaaacaacaccatatcctccttgacctaatttatctcgaaacgagtttgtcatttttttcacttctgcatatctata 31541681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 32351779 - 32351911
Alignment:
Q  11 tgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatta 110  Q
    ||||| |||||| |||| ||| | |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||| | |||||| ||| ||||  ||    
T  32351779 tgtgaggttctagtaattctatctacttcatttatgaaatcttttccatctccctttgaatcatttattattttcacctctacttgatgactatcacgta 32351878  T
Q  111 aacttgctttgtacacaacaccatatcctcctt 143  Q
    | |||   ||||||||||| | | |||||||||    
T  32351879 agcttatattgtacacaaccctaaatcctcctt 32351911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 32351090 - 32351158
Alignment:
Q  37 ttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatca 106  Q
    ||||||||||||||||||||||||| | ||||| || |||| || ||| |||| |||||||| |||||||    
T  32351090 ttcatttatgaattcttctccattttcatttgagtcatttattatttttaccg-cacttgacaaccatca 32351158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 15063102 - 15062793
Alignment:
Q  26 atgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaattaaacttgctttgtaca 125  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  ||||| |||  ||||||||||| || ||||| ||||||  |||||| |||||||| |    
T  15063102 atgcttgcaacttcatttataaattcttctccgtttcccttgcactcgcttatcactttcaccgctacatgacggccatcaggtaaactggctttgtaaa 15063003  T
Q  126 caacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaaccttttcgcttctgcataactataccacttcggcaccgacaaattaaatct 225  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||| ||| ||| ||||| ||||||||| ||||    
T  15063002 caacaccatatcctccttggcccaacttatctcgaaacgagtttgtgaaccttttcacatctgcataactaaaccgcttaggcactgacaaattatatct 15062903  T
Q  226 tttaatgaaatcctcaatatgatcttggtcgatagatattcttgttttcttgaagatccttgtttgtactaaacttagatacccctcacgtttacaaaca 325  Q
    ||| ||||||||||||||   ||| ||||| |||  ||||||||| |||||||||||||| |||| || ||| |||||||| |||| ||||||||||||     
T  15062902 ttttatgaaatcctcaat---atcgtggtcaataactattcttgtgttcttgaagatcctcgtttttaataagcttagatatcccttacgtttacaaac- 15062807  T
Q  326 atcatcacaataaata 341  Q
      ||||||||||||||    
T  15062806 --catcacaataaata 15062793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 52174065 - 52173895
Alignment:
Q  10 gtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatttccctttgactcgtttaatactttcaccgccacttgacgaccatcaatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||| || ||||||||||||||||||  |    
T  52174065 gtgtgatgttctactaatgctagcaacttcatttatgaattcttctccatccccctttaactcgtttattactttaacagccacttgacgaccatcaggt 52173966  T
Q  110 aaacttgctttgtacacaacaccatatcctccttgacccaacttatctcgaaatgagtttgtgaacctttt 180  Q
    |||||||||||||| |||||||||||||||||||| || || |||||||| || || ||||||| ||||||    
T  52173965 aaacttgctttgtatacaacaccatatcctccttggcctaatttatctcggaaagattttgtgatcctttt 52173895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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