View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6983_low_13 (Length: 357)
Name: NF6983_low_13
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6983_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 14519631 - 14519957
Alignment:
| Q |
15 |
tgagacttgaatcatctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgacaaaactatatacatctgccttggctga |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| || ||||| |
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| T |
14519631 |
tgagacttgaatcatctgaatgacgaaagctggtgtttttgtgaccactcacaatctccagtagcaatacgccaaaactatatacgtctgctttagctga |
14519730 |
T |
|
| Q |
115 |
taatacgccttgcatggcatattcaggagacatataaccactgaaaaatatagttagacgagattagtcaacttgaagtaataatgagcaagtggctgaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||| |||||||||||| |
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| T |
14519731 |
taatacgccttgcatggcatattcaggagacatataaccactgaaatataaagttagttgagattagtcaacttgaagtaagaatgaacaagtggctgaa |
14519830 |
T |
|
| Q |
215 |
tgagcttaaaaacaaaatcgaagtatacttactatgtaccaacgactctggttgtattggattcattctggtttccaccaaatatccgggccaagccaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14519831 |
tgagcttaaaaacaaaatcgaagtatacttactatgtaccaacgactctggttgtattggattcattctggtttccaccaaatatccgggccaagccaaa |
14519930 |
T |
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| Q |
315 |
gtcagatatttttggattcatgttttc |
341 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14519931 |
gtcagatatttttggattcatgttttc |
14519957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 36290926 - 36290785
Alignment:
| Q |
15 |
tgagacttgaatcatctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgacaaaactatatacatctgccttggctga |
114 |
Q |
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||||||||| ||||| |||| ||||||||||||||||||| | |||||||||||||||||||| | |||| |||||||||||||||| | ||| |||| |
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| T |
36290926 |
tgagacttggatcatacgaatcacgaaagctagtgtttttgcggccactcacaatctctagtagaagtacgccaaaactatatacatcagatttgactga |
36290827 |
T |
|
| Q |
115 |
taatacgccttgcatggcatattcaggagacatataaccact |
156 |
Q |
| |
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|||| || | ||| || ||||| ||||||||||| ||||| |
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| T |
36290826 |
aaatagaccctccattgcgtattctggagacatatatccact |
36290785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 36290707 - 36290608
Alignment:
| Q |
242 |
cttactatgtaccaacgactctggttgtattggattcattctggtttccaccaaatatccgggccaagccaaagtcagatatttttggattcatgttttc |
341 |
Q |
| |
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|||||||||| ||||| ||||| |||||| |||||| || ||||| ||||||||| |||||||||||||| || |||||||||||||| ||||| |
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| T |
36290707 |
cttactatgttccaactactctctctgtattcccttcattttgatttcccccaaatatctttgccaagccaaagtctgaaatttttggattcatattttc |
36290608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 2690472 - 2690802
Alignment:
| Q |
15 |
tgagacttgaatcatctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgacaaaactatatacatctgccttggctga |
114 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |
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| T |
2690472 |
tgagacttgaatattctgaatcaccaaagctagtgtttttgcggccactcacaatctctagtagcaatacgccaaaactatatacatctgacttgactga |
2690571 |
T |
|
| Q |
115 |
taatacgccttgcatggcatattcaggagacatataaccactgaaaaatatagtta----gacgagattagtcaacttgaagtaataatgagcaagtggc |
210 |
Q |
| |
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|||| ||||||||| ||||| ||| ||||||||||||||||||||| || ||||| | ||||||||||||||| |||||| ||||| |||||||| |
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| T |
2690572 |
aaataagccttgcatagcatactcatgagacatataaccactgaaaagtagagttaagtagttgagattagtcaactttaagtaagaatgaacaagtggc |
2690671 |
T |
|
| Q |
211 |
tgaatgagcttaaaaacaaaatcgaagtatacttactatgtaccaacgactctggttgtattggattcattctggtttccaccaaatatccgggccaagc |
310 |
Q |
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||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
2690672 |
tgaatgagcttaaaaacaaaaccgaagtatacttactgtgaaccaacgactctggttgtactggcttcattctggtttccaccaaatatctgggccaagc |
2690771 |
T |
|
| Q |
311 |
caaagtcagatatttttggattcatgttttc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
2690772 |
aaaagtcagatatttttggattcatgttttc |
2690802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 2698219 - 2698538
Alignment:
| Q |
17 |
agacttgaatcatctgaatgacgaaagctagtgtttttgtgaccactcacaatctctagtagcaatacgacaaaactatatacatctgccttggctgata |
116 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||||| ||||| |||||||||||||||||| ||| |||| | |
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| T |
2698219 |
agactcgaatcatctgagtgacgaaagctagtgtttctgcggccgctcacaatctctagtagtaatacaccaaaactatatacatctgatttgactgaaa |
2698318 |
T |
|
| Q |
117 |
atacgccttgcatggcatattcaggagacatataaccactgaa--aaatatagttagacgagattagtcaacttg-aagtaataatgagcaagtggctga |
213 |
Q |
| |
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|| ||||| ||| || |||||||||||||||||||||||| | | ||||| || |||||||| ||||| ||| | |||| || || |||| |
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| T |
2698319 |
ctaggccttccatagcgtattcaggagacatataaccactgcagtagatatattt----gagattagccaactcccaagaattaattag----tgactga |
2698410 |
T |
|
| Q |
214 |
atgagcttaaaaacaaaatcgaagtatacttactatgtaccaacgactctggttgtattggattcattctggtttccaccaaatatccgggccaagccaa |
313 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||||||||| ||| |||||| ||| |||||| || |||||||| ||||||||||||||||||| |
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| T |
2698411 |
atgagggtaaaaacaagggcaaagtatacttactatgtaccaaccactttggttgcattctcttcattttgatttccaccgaatatccgggccaagccaa |
2698510 |
T |
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| Q |
314 |
agtcagatatttttggattcatgttttc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
2698511 |
agtcagatatttttggattcatgttttc |
2698538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 2712575 - 2712607
Alignment:
| Q |
303 |
ggccaagccaaagtcagatatttttggattcat |
335 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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| T |
2712575 |
ggccatgccaaagtcagatatttttggattcat |
2712607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 20264279 - 20264188
Alignment:
| Q |
65 |
acaatctctagtagcaatacgacaaaactatatacatctgccttggctgataatacgccttgcatggcatattcaggagacatataaccact |
156 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | ||||||| ||| |||| |||| |||||||| |||||||| |||||||| |||||||| |
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|
| T |
20264279 |
acaatctctagtagcaatacaccaaagctaaaaacatctgacttctctgaaaataatccttgcattgcatattcgggagacatgtaaccact |
20264188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 20231820 - 20231732
Alignment:
| Q |
65 |
acaatctctagtagcaatacgacaaaactatatacatctgccttggctgataatacgccttgcatggcatattcaggagacatataacc |
153 |
Q |
| |
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|||||||||||||||||||| |||| ||| | ||||||| || |||| |||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
20231820 |
acaatctctagtagcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtaacc |
20231732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 20243892 - 20243801
Alignment:
| Q |
65 |
acaatctctagtagcaatacgacaaaactatatacatctgccttggctgataatacgccttgcatggcatattcaggagacatataaccact |
156 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | ||||||| || |||| |||| |||||||| ||||||||||||||||| || ||||| |
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|
| T |
20243892 |
acaatctctagtagcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtagccact |
20243801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 47619521 - 47619485
Alignment:
| Q |
126 |
gcatggcatattcaggagacatataaccactgaaaaa |
162 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||| |
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|
| T |
47619521 |
gcattgcatattcaggagacatataaccactgtaaaa |
47619485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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