View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6983_low_14 (Length: 351)

Name: NF6983_low_14
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6983_low_14
NF6983_low_14
[»] chr7 (5 HSPs)
chr7 (216-351)||(42785611-42785746)
chr7 (216-311)||(48478557-48478652)
chr7 (221-349)||(4341564-4341693)
chr7 (221-327)||(21958247-21958354)
chr7 (323-351)||(19803495-19803523)
[»] chr2 (1 HSPs)
chr2 (216-351)||(2743030-2743165)
[»] scaffold0158 (1 HSPs)
scaffold0158 (216-351)||(26417-26552)
[»] chr6 (10 HSPs)
chr6 (216-351)||(29934258-29934393)
chr6 (216-351)||(34255164-34255299)
chr6 (231-350)||(5130638-5130759)
chr6 (221-342)||(28145419-28145541)
chr6 (238-302)||(5249725-5249789)
chr6 (221-302)||(8520064-8520143)
chr6 (221-351)||(26620088-26620220)
chr6 (221-351)||(26726001-26726133)
chr6 (238-302)||(33295892-33295956)
chr6 (264-302)||(28222810-28222848)
[»] chr5 (2 HSPs)
chr5 (216-351)||(41528854-41528989)
chr5 (238-302)||(37368631-37368693)
[»] chr8 (2 HSPs)
chr8 (216-351)||(5558234-5558367)
chr8 (231-349)||(20810087-20810206)
[»] chr4 (6 HSPs)
chr4 (216-311)||(5600198-5600293)
chr4 (221-351)||(1506400-1506531)
chr4 (221-351)||(13713529-13713660)
chr4 (221-349)||(5577978-5578108)
chr4 (282-349)||(4852920-4852988)
chr4 (270-302)||(14190824-14190856)
[»] scaffold0046 (1 HSPs)
scaffold0046 (238-302)||(90865-90929)
[»] chr1 (2 HSPs)
chr1 (221-349)||(51844632-51844762)
chr1 (221-349)||(14114459-14114578)
[»] scaffold0038 (1 HSPs)
scaffold0038 (264-302)||(23308-23346)
[»] chr3 (1 HSPs)
chr3 (323-351)||(14530299-14530327)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 42785746 - 42785611
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42785746 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 42785647  T
Q  316 ctagttcagaaataatcattctactatctcatatct 351  Q
    ||||||||||||||||||||||||||||||||||||    
T  42785646 ctagttcagaaataatcattctactatctcatatct 42785611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 48478557 - 48478652
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataatt 311  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478557 tacatatcaattgtcttgataaaattttactccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataatt 48478652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 349
Target Start/End: Original strand, 4341564 - 4341693
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaat-aactaataattgtacctag 319  Q
    ||||||||  |||||| ||||||| ||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||| ||| |||||   ||||||     
T  4341564 atcaattgcgttgatagaatttccttccaacatttatactagcataaacatacttattaacataaatgagattttagaataaacaaataaggatacctaa 4341663  T
Q  320 ttcagaaataatcattctactatctcatat 349  Q
    ||||||||||||||||||||||||||||||    
T  4341664 ttcagaaataatcattctactatctcatat 4341693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 21958354 - 21958247
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaat-aactaataattgtacctag 319  Q
    ||||||||  |||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||     
T  21958354 atcaattgcattgatagaatttccctccaacatttatactaacatatacatacttattaacataaaagagattttagaataaactaataatggtacctaa 21958255  T
Q  320 ttcagaaa 327  Q
    ||||||||    
T  21958254 ttcagaaa 21958247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 19803495 - 19803523
Alignment:
Q  323 agaaataatcattctactatctcatatct 351  Q
    |||||||||||||||||||||||||||||    
T  19803495 agaaataatcattctactatctcatatct 19803523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 2743165 - 2743030
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2743165 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 2743066  T
Q  316 ctagttcagaaataatcattctactatctcatatct 351  Q
    ||||||||||||||||||||||||||||||||||||    
T  2743065 ctagttcagaaataatcattctactatctcatatct 2743030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 26552 - 26417
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26552 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 26453  T
Q  316 ctagttcagaaataatcattctactatctcatatct 351  Q
    |||||||| |||||||||||||||||||||||||||    
T  26452 ctagttcataaataatcattctactatctcatatct 26417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 29934393 - 29934258
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 315  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29934393 tacatatcaatcgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 29934294  T
Q  316 ctagttcagaaataatcattctactatctcatatct 351  Q
    ||||||||||||||||||||||||||||||||||||    
T  29934293 ctagttcagaaataatcattctactatctcatatct 29934258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 34255299 - 34255164
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34255299 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataaataataattgtac 34255200  T
Q  316 ctagttcagaaataatcattctactatctcatatct 351  Q
    ||||||||||||||||||||||||||||||||||||    
T  34255199 ctagttcagaaataatcattctactatctcatatct 34255164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 5130759 - 5130638
Alignment:
Q  231 ttgataaaatttccctccaacaattatgctaa-cataaacatacttattaacataaaagagattttagaataa-ctaataattgtacctagttcagaaat 328  Q
    |||||| |||| |||||||||| |||| |||  |||||||||| ||||||||||||| ||||||||||||||| | |||||   |||||| |||||||||    
T  5130759 ttgatagaattcccctccaacatttatactaggcataaacatatttattaacataaatgagattttagaataaacaaataaggatacctaattcagaaat 5130660  T
Q  329 aatcattctactatctcatatc 350  Q
    ||||||||||||||||||||||    
T  5130659 aatcattctactatctcatatc 5130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 221 - 342
Target Start/End: Original strand, 28145419 - 28145541
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaat-aactaataattgtacctag 319  Q
    ||||||||  |||||| ||||||||||||||| |||| ||| ||||||||||||||||||||| || ||||||||||||| ||| |||||   ||||||     
T  28145419 atcaattgcgttgatagaatttccctccaacatttatactagcataaacatacttattaacatgaatgagattttagaataaacaaataaggatacctaa 28145518  T
Q  320 ttcagaaataatcattctactat 342  Q
    |||| ||||||| ||||||||||    
T  28145519 ttcaaaaataattattctactat 28145541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 5249789 - 5249725
Alignment:
Q  238 aatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataa 302  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  5249789 aatttccctccaacatttatactaacatcaacatacttattaacataaaagagattttagaataa 5249725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 8520064 - 8520143
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataa 302  Q
    ||||||||||||| |||  ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||    
T  8520064 atcaattgtcttgctaa--tttccctccaacatttatactaacgtaaacatacttattaacataaaagagattgtagaataa 8520143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 26620220 - 26620088
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatactt-attaacataaaagagattttagaataactaa-taattgtaccta 318  Q
    ||||||||  |||||| |||| || ||||||| |||| ||| |||||||||| || ||||||||||| |||||||||||||||  || |||   ||||||    
T  26620220 atcaattgcgttgatagaattcccatccaacatttatactagcataaacatattttattaacataaatgagattttagaataaaaaaataagaataccta 26620121  T
Q  319 gttcagaaataatcattctactatctcatatct 351  Q
     |||| ||||||||||||||| |||||||||||    
T  26620120 attcaaaaataatcattctacaatctcatatct 26620088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 26726133 - 26726001
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatactt-attaacataaaagagattttagaataactaa-taattgtaccta 318  Q
    ||||||||  |||||| |||| || ||||||| |||| ||| |||||||||| || ||||||||||| |||||||||||||||  || |||   ||||||    
T  26726133 atcaattgcgttgatagaattcccatccaacatttatactagcataaacatattttattaacataaatgagattttagaataaaaaaataagaataccta 26726034  T
Q  319 gttcagaaataatcattctactatctcatatct 351  Q
     |||| ||||||||||||||| |||||||||||    
T  26726033 attcaaaaataatcattctacaatctcatatct 26726001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 33295956 - 33295892
Alignment:
Q  238 aatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataa 302  Q
    ||||||||||| ||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  33295956 aatttccctccgacatttatactaacatcaacatacttattaacataaaatagattttagaataa 33295892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 28222810 - 28222848
Alignment:
Q  264 ataaacatacttattaacataaaagagattttagaataa 302  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  28222810 ataaacatacttattaacataaatgagattatagaataa 28222848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 216 - 351
Target Start/End: Original strand, 41528854 - 41528989
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41528854 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtat 41528953  T
Q  316 ctagttcagaaataatcattctactatctcatatct 351  Q
    ||||||||||||||||||||||||||||||||||||    
T  41528954 ctagttcagaaataatcattctactatctcatatct 41528989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 37368693 - 37368631
Alignment:
Q  238 aatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataa 302  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||   ||||||||||||||||    
T  37368693 aatttccctccaacatttatactaacatcaacatacttattaacat--gagagattttagaataa 37368631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 216 - 351
Target Start/End: Original strand, 5558234 - 5558367
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataattgtac 315  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  5558234 tacatatcaattatcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaa--agattttagaataactaataattgtac 5558331  T
Q  316 ctagttcagaaataatcattctactatctcatatct 351  Q
    ||||||||||||||||||||||||||||||||||||    
T  5558332 ctagttcagaaataatcattctactatctcatatct 5558367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 20810206 - 20810087
Alignment:
Q  231 ttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaat-aactaataattgtacctagttcagaaata 329  Q
    |||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||| ||| |||||   |||||| ||||||||||    
T  20810206 ttgatagaatttccctccaacatttatactagcataaacatacttattaacataaatgagattttagaataaacaaataaggatacctaattcagaaata 20810107  T
Q  330 atcattctactatctcatat 349  Q
    ||||||||||||||| ||||    
T  20810106 atcattctactatcttatat 20810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 5600198 - 5600293
Alignment:
Q  216 tacatatcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataatt 311  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5600198 tacatatcaattgtcttgataaaattttactccaacaattatgctaacataaacatacttattaacataaaagagattttagaataactaataatt 5600293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 351
Target Start/End: Original strand, 1506400 - 1506531
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaat-aactaataattgtacctag 319  Q
    ||||||||  |||||| |||| |||||||||| |||| ||| |||||||||| ||||||| ||||| ||||||||||||| ||| |||||   ||||||     
T  1506400 atcaattgcgttgatagaattcccctccaacatttatactagcataaacatatttattaatataaatgagattttagaataaacaaataaggatacctaa 1506499  T
Q  320 ttcagaaataatcattctactatctcatatct 351  Q
    |||||||||||||||||||| |||||||||||    
T  1506500 ttcagaaataatcattctaccatctcatatct 1506531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 351
Target Start/End: Original strand, 13713529 - 13713660
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataacta-ataattgtacctag 319  Q
    ||||||||  |||||| |||| |||||||||| |||| ||| |||||||||| ||||||||||||| |||||||||||||||  | ||||   ||||||     
T  13713529 atcaattgcattgatagaattcccctccaacatttatactagcataaacatatttattaacataaatgagattttagaataaacacataaggatacctaa 13713628  T
Q  320 ttcagaaataatcattctactatctcatatct 351  Q
    |||||||||||||||| |||||||||||||||    
T  13713629 ttcagaaataatcattttactatctcatatct 13713660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 349
Target Start/End: Complemental strand, 5578108 - 5577978
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaat-aactaataattgtacctag 319  Q
    ||||||||  |||||| || |||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||| ||| |||||   | ||||     
T  5578108 atcaattgcgttgatagaacttccctccaacatttatactagcataaacatacttattaacataaatgagattttagaataaacaaataaagattcctaa 5578009  T
Q  320 ttc-agaaataatcattctactatctcatat 349  Q
    ||| | ||||||| |||||||||||||||||    
T  5578008 ttcaaaaaataattattctactatctcatat 5577978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 4852920 - 4852988
Alignment:
Q  282 ataaaagagattttagaataa-ctaataattgtacctagttcagaaataatcattctactatctcatat 349  Q
    ||||| ||||||||||||||| | |||||   |||||| ||||||||||||||||||||||||||||||    
T  4852920 ataaatgagattttagaataaacaaataaggatacctaattcagaaataatcattctactatctcatat 4852988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 14190824 - 14190856
Alignment:
Q  270 atacttattaacataaaagagattttagaataa 302  Q
    ||||||||||||||||||| |||||||||||||    
T  14190824 atacttattaacataaaagggattttagaataa 14190856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 90865 - 90929
Alignment:
Q  238 aatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataa 302  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  90865 aatttccctccaacatttatactaacatcaacatacttattaacataaaagagattttagaataa 90929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 349
Target Start/End: Original strand, 51844632 - 51844762
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagatttt-agaataactaataattg-taccta 318  Q
    ||||||||  |||||| |||||  |||| ||| |||| ||| |||||||||||||||||||||||| |||||||| |||||||  ||| |  | ||||||    
T  51844632 atcaattgcgttgatagaatttgtctcccacatttatactagcataaacatacttattaacataaatgagatttttagaataaacaattaaggataccta 51844731  T
Q  319 gttcagaaataatcattctactatctcatat 349  Q
     ||||||||||||||||||||||||||||||    
T  51844732 attcagaaataatcattctactatctcatat 51844762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 349
Target Start/End: Complemental strand, 14114578 - 14114459
Alignment:
Q  221 atcaattgtcttgataaaatttccctccaacaattatgctaacataaacatacttattaacataaaagagattttagaataa-ctaataattgtacctag 319  Q
    ||||||||  |||||| ||||||||||||||| |||| ||| ||||||||||          |||| ||||||||||||||| | |||||   ||||||     
T  14114578 atcaattgcgttgatagaatttccctccaacatttatactagcataaacata----------taaatgagattttagaataaacaaataaggatacctaa 14114489  T
Q  320 ttcagaaataatcattctactatctcatat 349  Q
    ||||||||||||||||||||||||||||||    
T  14114488 ttcagaaataatcattctactatctcatat 14114459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 23308 - 23346
Alignment:
Q  264 ataaacatacttattaacataaaagagattttagaataa 302  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  23308 ataaacatacttattaacataaatgagattatagaataa 23346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 14530327 - 14530299
Alignment:
Q  323 agaaataatcattctactatctcatatct 351  Q
    |||||||||||||||||||||||||||||    
T  14530327 agaaataatcattctactatctcatatct 14530299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University