View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6983_low_3 (Length: 537)

Name: NF6983_low_3
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6983_low_3
NF6983_low_3
[»] chr7 (9 HSPs)
chr7 (165-518)||(5285249-5285602)
chr7 (5-115)||(5285089-5285199)
chr7 (5-114)||(5315892-5316001)
chr7 (8-115)||(5303280-5303387)
chr7 (5-115)||(5288928-5289038)
chr7 (5-115)||(5311178-5311288)
chr7 (9-115)||(46706219-46706325)
chr7 (167-265)||(5303433-5303530)
chr7 (165-282)||(5311331-5311448)
[»] chr5 (8 HSPs)
chr5 (5-115)||(1505758-1505868)
chr5 (8-115)||(1492952-1493059)
chr5 (11-115)||(1482980-1483084)
chr5 (11-89)||(1500027-1500105)
chr5 (12-85)||(1487458-1487531)
chr5 (212-299)||(1506368-1506454)
chr5 (17-85)||(1478792-1478860)
chr5 (53-109)||(1509931-1509987)
[»] chr1 (3 HSPs)
chr1 (9-115)||(44129359-44129465)
chr1 (5-114)||(44133560-44133669)
chr1 (5-115)||(44141982-44142092)
[»] chr2 (1 HSPs)
chr2 (11-113)||(24163023-24163125)
[»] chr3 (1 HSPs)
chr3 (479-519)||(528516-528556)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 165 - 518
Target Start/End: Original strand, 5285249 - 5285602
Alignment:
Q  165 atgtaaggatgaaatttcatctagtgttcaatatgtaccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttga 264  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5285249 atgtaaggatgaaatttcatctagtgttcaatatataccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttga 5285348  T
Q  265 ccaaatatcatttataataaagaagcaaatcgtgtcagcatattaacgacgataaagatgattatatgtttgaaacttatgaattaagtgttgtaatgtt 364  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  5285349 ctaaatatcatttataataaagaagcaaatcgtgtcagcatattaacgacgataaagatgattatatgtttgaaacttatgaattaagttttgtaatgta 5285448  T
Q  365 ttaatgtaatgtgtgtactcttcttacttttagtgttcgaaactaatagctagaattcagcattttaactgcggtttatcttcgaatttatccgcaggaa 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5285449 ttaatgtaatgtgtgtactcttcttacttttagtgttcgaaactaatagctagaattcagcattttgactgcggtttatcttcgaatttatccgcaggaa 5285548  T
Q  465 atcctgaggattattcctgtggtggcaggaaaatccgaaggtaactagcacttt 518  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5285549 atcctggggattattcctgtggtggcaggaaaatccgaaggtaactagcacttt 5285602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 5285089 - 5285199
Alignment:
Q  5 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 104  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5285089 ggattgaagacaacgggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 5285188  T
Q  105 gagatgcttaa 115  Q
    |||||||||||    
T  5285189 gagatgcttaa 5285199  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 5315892 - 5316001
Alignment:
Q  5 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||    
T  5315892 ggattgaagacaacgggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaacggttgttttgcgcagcgtggctatat 5315991  T
Q  105 gagatgctta 114  Q
    ||||||||||    
T  5315992 gagatgctta 5316001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 5303280 - 5303387
Alignment:
Q  8 ttgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgag 107  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||    
T  5303280 ttgaagacaactggagaaggacttgaatggggtgtgttatttggttttggaccaggacttacaattgaaacggttgttttgcgcagtgtcgctatatgag 5303379  T
Q  108 atgcttaa 115  Q
    ||||||||    
T  5303380 atgcttaa 5303387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 5289038 - 5288928
Alignment:
Q  5 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 104  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||    
T  5289038 ggattgaagacaactggagaaggacttgaatggggtgtcttatttggttttggaccaggacttaccattgaaactgttgttttacgtagtgtggccatat 5288939  T
Q  105 gagatgcttaa 115  Q
    |||||| ||||    
T  5288938 gagatgtttaa 5288928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 5311178 - 5311288
Alignment:
Q  5 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 104  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||||    
T  5311178 ggattgaagacaacgggagaaggacttgagtggggtgtattatttggttttggaccaggacttaccattgaaacagttgttttgcgtagtgtgaccatat 5311277  T
Q  105 gagatgcttaa 115  Q
    |||||| ||||    
T  5311278 gagatgtttaa 5311288  T

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Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 46706325 - 46706219
Alignment:
Q  9 tgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgaga 108  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||| |||||| || |||||| |    
T  46706325 tgaagacaacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccatagaaactgttgttttgcacagtgtcgctatatgaaa 46706226  T
Q  109 tgcttaa 115  Q
    |||||||    
T  46706225 tgcttaa 46706219  T

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Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 5303433 - 5303530
Alignment:
Q  167 gtaaggatgaaatttcatctagtgttcaatatgtaccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttgac 265  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||  |||||||| || ||||||||||||||||||||    
T  5303433 gtaaggatgaaatttcatctagtgttcaacatgtaccctcatatt-aaataatacacttgtgattcactttatatttttacaatagttatttatttgac 5303530  T

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Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 5311331 - 5311448
Alignment:
Q  165 atgtaaggatgaaatttcatctagtgttcaatatgtaccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttga 264  Q
    ||||| ||||| |||||||||||||||| || |||||| ||||||||||||||| | ||||||||||| ||||||||  ||||||| ||||| ||||| |    
T  5311331 atgtatggatgtaatttcatctagtgtttaacatgtactatcatattaaaataagagaattgtgattacctttatattctaacaatggttatatatttta 5311430  T
Q  265 ccaaatatcatttataat 282  Q
    | ||| ||||||||||||    
T  5311431 caaaacatcatttataat 5311448  T

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Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 1505758 - 1505868
Alignment:
Q  5 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 104  Q
    ||||||||||| || |||||||||| |||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||| ||||    
T  1505758 ggattgaagactaccggagaaggacatgaatggggtgtgttatttggctttggaccgggacttactattgaaactgttgttttgcgtagtgttgctatat 1505857  T
Q  105 gagatgcttaa 115  Q
    |||||||||||    
T  1505858 gagatgcttaa 1505868  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 1492952 - 1493059
Alignment:
Q  8 ttgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgag 107  Q
    ||||||||||| |||||||| | ||||||||||||  |||| || ||||||||||||||||||||||| || ||||| ||||||||||| || |||| ||    
T  1492952 ttgaagacaaccggagaagggcatgaatggggtgtgctattcggctttggaccaggacttaccattgagactgttgtcttgcgcagtgtagctatataag 1493051  T
Q  108 atgcttaa 115  Q
    ||||||||    
T  1493052 atgcttaa 1493059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 1482980 - 1483084
Alignment:
Q  11 aagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagatg 110  Q
    ||||| ||||||||||| ||||| |||||||| || || || |||||||| |||||||||||||||||||||||||||| |||||| || |||||| | |    
T  1482980 aagaccacaggagaagggcttgattggggtgtgttgttcggctttggacctggacttaccattgaaaccgttgttttgcacagtgtggctatatgataag 1483079  T
Q  111 cttaa 115  Q
    |||||    
T  1483080 cttaa 1483084  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 1500027 - 1500105
Alignment:
Q  11 aagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgc 89  Q
    ||||| ||||| |||||||  |||||||||||||| ||  | |||||||| ||||||||||||||||| ||||||||||    
T  1500027 aagaccacaggtgaaggacaagaatggggtgtattgttaagctttggacctggacttaccattgaaactgttgttttgc 1500105  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 1487458 - 1487531
Alignment:
Q  12 agacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgtt 85  Q
    |||| ||||||||||||||| ||||||| || || || || |||||||| ||||||||||||||||| ||||||    
T  1487458 agaccacaggagaaggacttaaatggggagtgttgttcggctttggacctggacttaccattgaaactgttgtt 1487531  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 1506368 - 1506454
Alignment:
Q  212 aaaataatacaattgtgattagctttatatattaacaatagttatttatttgaccaa-atatcatttataataaagaagcaaatcgtgt 299  Q
    ||||||||| |||||| |||||||||||||  ||   ||||||||||||||||  || |||||||||||||| |||||| |||||||||    
T  1506368 aaaataatataattgtcattagctttatattctac--atagttatttatttgaaaaatatatcatttataattaagaagtaaatcgtgt 1506454  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 1478792 - 1478860
Alignment:
Q  17 acaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgtt 85  Q
    ||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| ||||||||||| ||||||    
T  1478792 acaggtgaaggccttgactggggtgtgttgtttggctttggacctggactcaccattgaaacagttgtt 1478860  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 1509931 - 1509987
Alignment:
Q  53 tttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagat 109  Q
    ||||||||  |||||||||||||||| |||||| | |||||||| ||||||| ||||    
T  1509931 tttggacctagacttaccattgaaacagttgttcttcgcagtgtagccatataagat 1509987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 44129359 - 44129465
Alignment:
Q  9 tgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgaga 108  Q
    ||||||| || |||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| || |||||||     
T  44129359 tgaagaccacgggagaaggacttgagtggggtgttttatttggctttggaccaggtcttactattgaaactgttgttttgcgcagtgtcgctatatgagg 44129458  T
Q  109 tgcttaa 115  Q
    |||||||    
T  44129459 tgcttaa 44129465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 44133560 - 44133669
Alignment:
Q  5 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 104  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||||| |||||||| || |||||||||||||| ||||||||||| ||| | || ||||    
T  44133560 ggattgaagaccacaggagaaggacttgaatttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtatcgctatat 44133659  T
Q  105 gagatgctta 114  Q
    ||| ||||||    
T  44133660 gaggtgctta 44133669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 44141982 - 44142092
Alignment:
Q  5 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 104  Q
    ||||||||||| || |||||||||||||| |  ||||| |||||||| |||||||| || |||||||||||||| |||||||| |||||||| || ||||    
T  44141982 ggattgaagaccacgggagaaggacttgagtttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttacgcagtgtcgctatat 44142081  T
Q  105 gagatgcttaa 115  Q
    ||| |||||||    
T  44142082 gaggtgcttaa 44142092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 24163125 - 24163023
Alignment:
Q  11 aagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagatg 110  Q
    ||||| ||||||||||| |||||||||||||| || ||  | ||||| ||||||||||||||||||||  ||||| | | |||||| || |||||| |||    
T  24163125 aagaccacaggagaagggcttgaatggggtgtgttgttaagctttgggccaggacttaccattgaaacgattgttctccacagtgtggctatatgatatg 24163026  T
Q  111 ctt 113  Q
    |||    
T  24163025 ctt 24163023  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 528556 - 528516
Alignment:
Q  479 tcctgtggtggcaggaaaatccgaaggtaactagcactttt 519  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  528556 tcctgtggtggcaggaaaatcctaaggtaactaccactttt 528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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