View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6983_low_4 (Length: 512)
Name: NF6983_low_4
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6983_low_4 |
 | |
|
| [»] scaffold0534 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 21531121 - 21531467
Alignment:
| Q |
18 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
21531121 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatat--gatactactattgttttgatatgt |
21531218 |
T |
|
| Q |
118 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatctgattcaattccatc |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21531219 |
ttatgttaatcgtatttatgttt-gttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctttgagatctgattcaattccatc |
21531317 |
T |
|
| Q |
218 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21531318 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctg |
21531417 |
T |
|
| Q |
318 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21531418 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
21531467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 35167062 - 35167408
Alignment:
| Q |
18 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
35167062 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatat--gatactactattgttttgatatgt |
35167159 |
T |
|
| Q |
118 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatctgattcaattccatc |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35167160 |
ttatgttaatcgtatttatgttt-gttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctttgagatctgattcaattccatc |
35167258 |
T |
|
| Q |
218 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctt |
317 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35167259 |
gtctaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctg |
35167358 |
T |
|
| Q |
318 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35167359 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
35167408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 369 - 496
Target Start/End: Original strand, 35167652 - 35167779
Alignment:
| Q |
369 |
gtacttccttcagtgatgatgagaagaaagatagcagggacttgaagtcatcttgcggtgtacgcattttaaaatgcgacgcgatgttgctttatgatca |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35167652 |
gtacttccttcagtgatgatgagaagaaagatgtcagggacttgaagtcatcttgcggtgtacacatttcaaaatgcgacgcgatgttgctttatgatca |
35167751 |
T |
|
| Q |
469 |
acaacttctgaaattgtatgaagagcac |
496 |
Q |
| |
|
||||||| |||||| ||||||||||||| |
|
|
| T |
35167752 |
acaacttatgaaatcgtatgaagagcac |
35167779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 369 - 496
Target Start/End: Original strand, 21531711 - 21531838
Alignment:
| Q |
369 |
gtacttccttcagtgatgatgagaagaaagatagcagggacttgaagtcatcttgcggtgtacgcattttaaaatgcgacgcgatgttgctttatgatca |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
21531711 |
gtacttccttcagtgatgatgagaagaaagatgtcagggacttgaagtcatcttgcggtgtacacatttcaaaatgcgatgcgatgttgctttatgatca |
21531810 |
T |
|
| Q |
469 |
acaacttctgaaattgtatgaagagcac |
496 |
Q |
| |
|
||||||| |||||| ||||||||||||| |
|
|
| T |
21531811 |
acaacttatgaaatcgtatgaagagcac |
21531838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 17593992 - 17593646
Alignment:
| Q |
18 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
17593992 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatat--gatactactattgttttgatatgt |
17593895 |
T |
|
| Q |
118 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatctgattcaattccatc |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17593894 |
ttatgttaatcgtatttatgttt-gttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctttgagatctgattcaattccatc |
17593796 |
T |
|
| Q |
218 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17593795 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagtagcctg |
17593696 |
T |
|
| Q |
318 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17593695 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
17593646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 34743310 - 34743656
Alignment:
| Q |
18 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
34743310 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatat--gatactactattgttttgatatgt |
34743407 |
T |
|
| Q |
118 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatctgattcaattccatc |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34743408 |
ttatgttaatcgtatttatgttt-gttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctttgagatctgattcaattccatc |
34743506 |
T |
|
| Q |
218 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34743507 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagtagcctg |
34743606 |
T |
|
| Q |
318 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34743607 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
34743656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 369 - 496
Target Start/End: Original strand, 34743900 - 34744027
Alignment:
| Q |
369 |
gtacttccttcagtgatgatgagaagaaagatagcagggacttgaagtcatcttgcggtgtacgcattttaaaatgcgacgcgatgttgctttatgatca |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
34743900 |
gtacttccttcagtgatgatgagaagaaagatgtcagggacttgaagtcatcttgcggtgtacacatttcaaaatgcgatgcgatgttgctttatgatca |
34743999 |
T |
|
| Q |
469 |
acaacttctgaaattgtatgaagagcac |
496 |
Q |
| |
|
||||||| |||||| ||||||||||||| |
|
|
| T |
34744000 |
acaacttatgaaatcgtatgaagagcac |
34744027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 275
Target Start/End: Original strand, 45550982 - 45551154
Alignment:
| Q |
104 |
ttgttttggtatgtttatgttaatcgtatctatgt-tttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatc |
202 |
Q |
| |
|
||||| || |||||||||||||||| ||| ||| | ||| |||||||| || |||||||||||||| ||||| |||||| ||||| ||||| || || |
|
|
| T |
45550982 |
ttgttatgatatgtttatgttaatcatatttatatgtttattatttgggctgcaggtatgattctgaaggtaaggatgctgcaatggttgctttaaggtc |
45551081 |
T |
|
| Q |
203 |
tgattcaattccatcgtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacc |
275 |
Q |
| |
|
|| ||||||||||| || || | ||||| | |||| |||||||| | ||||||| | ||||| |||||||| |
|
|
| T |
45551082 |
tggatcaattccatcatctaacagcggaattagatcattgtactctaactgtgttccactttctcacataacc |
45551154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 45546457 - 45546584
Alignment:
| Q |
156 |
aggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatctgattcaattccatcgtccaagaatggaatcaaatcagtgtactctgattgtg |
255 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||| ||||| || |||| ||||||| |||| || || | ||||| | |||||| |||||||| ||| |
|
|
| T |
45546457 |
aggtatgattctgaaggtaaggatgctgcaatggctgctataagctctggttcaatttcatcatctaacagtggaagtagatcagtttactctgaccgtg |
45546556 |
T |
|
| Q |
256 |
ttcaagtttcttacataacctcaaacct |
283 |
Q |
| |
|
||| | | |||||||||||||| ||||| |
|
|
| T |
45546557 |
ttccactctcttacataacctctaacct |
45546584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 43314020 - 43313674
Alignment:
| Q |
18 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
43314020 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatat--gatactactattgttttgatatgt |
43313923 |
T |
|
| Q |
118 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatctgattcaattccatc |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43313922 |
ttatgttaatcgtatttatgttt-gttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctttgagatctgattcaattccatt |
43313824 |
T |
|
| Q |
218 |
gtccaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctt |
317 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43313823 |
gtctaagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcattgagcagcctg |
43313724 |
T |
|
| Q |
318 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43313723 |
cattctttatatttagaggatatacatatgttcattattctctttagggt |
43313674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 369 - 496
Target Start/End: Complemental strand, 43313430 - 43313303
Alignment:
| Q |
369 |
gtacttccttcagtgatgatgagaagaaagatagcagggacttgaagtcatcttgcggtgtacgcattttaaaatgcgacgcgatgttgctttatgatca |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
43313430 |
gtacttccttcagtgatgatgagaagaaagatgtcagggacttgaagtcatcttgcggtgtacacatttcaaaatgcgatgcgatgttgctttatgatca |
43313331 |
T |
|
| Q |
469 |
acaacttctgaaattgtatgaagagcac |
496 |
Q |
| |
|
||||||| |||||| ||||||||||||| |
|
|
| T |
43313330 |
acaacttatgaaatcgtatgaagagcac |
43313303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 50134995 - 50134716
Alignment:
| Q |
22 |
gtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgtttat |
121 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| ||| |||||| ||||||||| |||||| ||||||||| |
|
|
| T |
50134995 |
gtttatgtctgatgtgtgaagtgaattgatttcaggataactgcgttaacactttctgcaaaaaatatat--gatactact---gttttgatatgtttat |
50134901 |
T |
|
| Q |
122 |
gttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatgtctgcttcgagatctgattcaattccatcgtcc |
221 |
Q |
| |
|
||||||| ||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||| ||| |
|
|
| T |
50134900 |
gttaatcatatttatattt-gttatttggtatgtaggtatgattctgaaggtaatgatgcttcaatgtccactttaagctctagttcaattccatcatcc |
50134802 |
T |
|
| Q |
222 |
aagaatggaatcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcatgggctgagaaggaattcatt |
307 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
50134801 |
gacaatggaagcaaatcagtgtactctgattgtgttcaagtttcttacataacctcaaaccttcgggggctgagaaggtattcatt |
50134716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 11510 - 11482
Alignment:
| Q |
335 |
ggatatacatatgttcattattctcttta |
363 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11510 |
ggatatacatatgttcattattctcttta |
11482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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