View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6983_low_5 (Length: 488)

Name: NF6983_low_5
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6983_low_5
NF6983_low_5
[»] chr7 (27 HSPs)
chr7 (172-364)||(3935960-3936151)
chr7 (172-368)||(42877161-42877358)
chr7 (172-311)||(19225714-19225854)
chr7 (172-279)||(43737060-43737167)
chr7 (172-289)||(28230584-28230700)
chr7 (172-282)||(47202427-47202537)
chr7 (172-312)||(42925757-42925897)
chr7 (172-229)||(8154885-8154942)
chr7 (172-231)||(24042304-24042363)
chr7 (172-283)||(36468652-36468762)
chr7 (263-360)||(5639973-5640070)
chr7 (172-273)||(36408314-36408414)
chr7 (179-239)||(9151789-9151850)
chr7 (172-289)||(36629130-36629248)
chr7 (172-318)||(37518411-37518557)
chr7 (172-222)||(33574150-33574200)
chr7 (1-36)||(2611894-2611929)
chr7 (176-229)||(26555161-26555214)
chr7 (176-221)||(31985638-31985685)
chr7 (176-282)||(3304878-3304985)
chr7 (134-165)||(24042248-24042279)
chr7 (188-223)||(37218237-37218272)
chr7 (134-165)||(37518355-37518386)
chr7 (48-82)||(26555086-26555120)
chr7 (195-229)||(28349192-28349226)
chr7 (48-82)||(33151399-33151433)
chr7 (172-229)||(31643027-31643084)
[»] chr2 (27 HSPs)
chr2 (176-364)||(44465843-44466031)
chr2 (172-363)||(32187980-32188172)
chr2 (172-338)||(33452554-33452720)
chr2 (172-360)||(45153902-45154093)
chr2 (172-366)||(41855010-41855196)
chr2 (172-362)||(39447009-39447205)
chr2 (172-315)||(17474910-17475055)
chr2 (172-285)||(41510539-41510653)
chr2 (172-293)||(25217901-25218022)
chr2 (172-289)||(15995224-15995342)
chr2 (172-231)||(4268349-4268408)
chr2 (172-282)||(36949056-36949166)
chr2 (263-367)||(35739490-35739594)
chr2 (172-223)||(36874977-36875028)
chr2 (176-229)||(9847540-9847593)
chr2 (294-363)||(4268412-4268481)
chr2 (176-229)||(5507402-5507455)
chr2 (176-229)||(34517087-34517140)
chr2 (185-221)||(38308918-38308954)
chr2 (176-223)||(33366920-33366966)
chr2 (172-223)||(42894369-42894420)
chr2 (247-289)||(25715289-25715331)
chr2 (176-222)||(38066788-38066834)
chr2 (48-82)||(39447358-39447392)
chr2 (367-400)||(27610080-27610113)
chr2 (136-165)||(42894445-42894474)
chr2 (134-162)||(32187924-32187952)
[»] chr4 (31 HSPs)
chr4 (172-366)||(19835376-19835571)
chr4 (173-364)||(53894108-53894299)
chr4 (172-359)||(25491511-25491698)
chr4 (172-362)||(48319181-48319369)
chr4 (172-342)||(7931541-7931709)
chr4 (172-366)||(40703515-40703715)
chr4 (172-311)||(17933253-17933392)
chr4 (172-289)||(54631579-54631696)
chr4 (172-288)||(46440390-46440507)
chr4 (172-229)||(6228927-6228984)
chr4 (176-228)||(8106387-8106439)
chr4 (172-363)||(29822477-29822670)
chr4 (172-231)||(25539064-25539123)
chr4 (172-231)||(38536162-38536221)
chr4 (172-282)||(23523847-23523957)
chr4 (172-229)||(25752560-25752617)
chr4 (172-229)||(32441805-32441862)
chr4 (247-363)||(18051125-18051240)
chr4 (172-231)||(55052735-55052794)
chr4 (249-363)||(31582555-31582669)
chr4 (176-229)||(3703370-3703423)
chr4 (172-229)||(49397002-49397059)
chr4 (176-281)||(50392529-50392635)
chr4 (172-223)||(34972864-34972915)
chr4 (278-362)||(35420715-35420801)
chr4 (172-273)||(2506147-2506250)
chr4 (247-343)||(42660449-42660544)
chr4 (263-318)||(53668758-53668813)
chr4 (183-223)||(5865208-5865248)
chr4 (367-399)||(11244812-11244844)
chr4 (176-220)||(38416568-38416612)
[»] chr8 (26 HSPs)
chr8 (179-364)||(42281017-42281202)
chr8 (172-364)||(8885569-8885760)
chr8 (172-314)||(34853231-34853372)
chr8 (172-330)||(28916662-28916826)
chr8 (172-274)||(44106164-44106266)
chr8 (172-268)||(27928057-27928153)
chr8 (172-359)||(3094533-3094724)
chr8 (172-315)||(9073404-9073547)
chr8 (176-293)||(41530591-41530708)
chr8 (255-354)||(27928298-27928397)
chr8 (172-231)||(37248542-37248601)
chr8 (247-318)||(40994716-40994787)
chr8 (172-229)||(31520008-31520065)
chr8 (176-231)||(16310583-16310638)
chr8 (176-289)||(36404274-36404387)
chr8 (179-282)||(21004323-21004426)
chr8 (176-229)||(35676658-35676711)
chr8 (263-343)||(5196051-5196131)
chr8 (172-221)||(11698402-11698451)
chr8 (134-165)||(27928001-27928032)
chr8 (181-223)||(10840881-10840923)
chr8 (135-165)||(37248626-37248656)
chr8 (172-202)||(40994805-40994835)
chr8 (172-229)||(7971114-7971170)
chr8 (185-229)||(17120009-17120053)
chr8 (187-223)||(40392526-40392562)
[»] chr5 (33 HSPs)
chr5 (179-369)||(31929229-31929418)
chr5 (172-364)||(38692898-38693093)
chr5 (172-363)||(6156545-6156736)
chr5 (176-324)||(28083498-28083646)
chr5 (172-359)||(15799043-15799230)
chr5 (172-330)||(40620106-40620267)
chr5 (172-289)||(20891500-20891618)
chr5 (172-289)||(38871559-38871676)
chr5 (172-343)||(39524611-39524781)
chr5 (172-231)||(33487556-33487615)
chr5 (250-360)||(28108199-28108309)
chr5 (172-229)||(12465222-12465279)
chr5 (172-229)||(26190414-26190471)
chr5 (172-289)||(15957638-15957754)
chr5 (172-289)||(25746915-25747030)
chr5 (172-229)||(37095031-37095087)
chr5 (172-239)||(38372246-38372314)
chr5 (172-223)||(14111851-14111902)
chr5 (172-289)||(24203800-24203913)
chr5 (172-221)||(31221455-31221504)
chr5 (176-302)||(37183902-37184028)
chr5 (185-229)||(32842101-32842145)
chr5 (172-231)||(4064836-4064895)
chr5 (176-231)||(27212654-27212709)
chr5 (172-223)||(34440688-34440738)
chr5 (172-282)||(26319013-26319122)
chr5 (176-229)||(34529976-34530029)
chr5 (134-165)||(29862642-29862673)
chr5 (183-221)||(11186303-11186341)
chr5 (278-369)||(23348334-23348427)
chr5 (185-223)||(28445540-28445578)
chr5 (176-229)||(8032219-8032272)
chr5 (278-359)||(20231031-20231114)
[»] chr1 (35 HSPs)
chr1 (172-365)||(32817727-32817919)
chr1 (172-343)||(42545839-42546010)
chr1 (172-362)||(7011062-7011253)
chr1 (172-358)||(40650791-40650981)
chr1 (247-362)||(38885092-38885207)
chr1 (176-311)||(45567996-45568132)
chr1 (172-363)||(49677343-49677526)
chr1 (176-318)||(52744937-52745079)
chr1 (172-299)||(15069958-15070085)
chr1 (172-229)||(44573212-44573269)
chr1 (172-312)||(40908050-40908190)
chr1 (172-229)||(23442724-23442781)
chr1 (172-229)||(34162837-34162894)
chr1 (172-229)||(49786255-49786312)
chr1 (172-228)||(18583660-18583716)
chr1 (172-239)||(45046967-45047034)
chr1 (172-229)||(33611526-33611583)
chr1 (172-223)||(30829582-30829632)
chr1 (172-223)||(32542388-32542439)
chr1 (172-238)||(17000355-17000421)
chr1 (172-318)||(41584786-41584932)
chr1 (263-366)||(18238183-18238289)
chr1 (176-293)||(43319316-43319433)
chr1 (172-223)||(24471431-24471481)
chr1 (176-228)||(34006246-34006298)
chr1 (187-222)||(26723614-26723649)
chr1 (275-358)||(33805520-33805603)
chr1 (185-223)||(9446183-9446221)
chr1 (135-165)||(17000446-17000476)
chr1 (186-223)||(800932-800969)
chr1 (176-221)||(24472950-24472995)
chr1 (176-229)||(28866751-28866803)
chr1 (134-163)||(40650735-40650764)
chr1 (187-223)||(890500-890536)
chr1 (278-365)||(45047044-45047132)
[»] chr3 (35 HSPs)
chr3 (172-363)||(34821512-34821703)
chr3 (172-362)||(51540730-51540921)
chr3 (172-318)||(35141974-35142117)
chr3 (172-362)||(38977864-38978058)
chr3 (172-363)||(3902922-3903118)
chr3 (186-364)||(47122957-47123135)
chr3 (186-364)||(47130323-47130501)
chr3 (172-289)||(47740048-47740165)
chr3 (172-230)||(501257-501315)
chr3 (172-231)||(50716236-50716295)
chr3 (172-231)||(50796552-50796611)
chr3 (172-230)||(3937373-3937431)
chr3 (172-282)||(47301952-47302062)
chr3 (173-237)||(33438499-33438564)
chr3 (179-293)||(51258325-51258438)
chr3 (247-363)||(4394087-4394202)
chr3 (172-227)||(34821459-34821514)
chr3 (179-294)||(39149731-39149845)
chr3 (179-229)||(42936686-42936736)
chr3 (176-229)||(45244375-45244428)
chr3 (176-282)||(48303924-48304030)
chr3 (172-282)||(2358738-2358849)
chr3 (172-230)||(28872988-28873046)
chr3 (172-273)||(3352182-3352284)
chr3 (186-221)||(30721939-30721974)
chr3 (172-239)||(46622900-46622969)
chr3 (247-282)||(8735104-8735139)
chr3 (247-282)||(9087345-9087380)
chr3 (194-229)||(33700775-33700810)
chr3 (134-165)||(39149877-39149908)
chr3 (247-293)||(33700679-33700725)
chr3 (176-229)||(49096347-49096400)
chr3 (278-326)||(12717179-12717227)
chr3 (247-295)||(28830283-28830331)
chr3 (134-162)||(33438592-33438620)
[»] chr6 (18 HSPs)
chr6 (172-363)||(7412678-7412871)
chr6 (172-367)||(14587676-14587870)
chr6 (172-330)||(17264294-17264453)
chr6 (172-229)||(32035099-32035156)
chr6 (172-274)||(3717399-3717501)
chr6 (172-289)||(4508418-4508535)
chr6 (172-231)||(5699542-5699601)
chr6 (179-229)||(1945652-1945702)
chr6 (172-230)||(23406781-23406839)
chr6 (176-229)||(24604482-24604535)
chr6 (172-229)||(33413463-33413519)
chr6 (247-318)||(21517662-21517738)
chr6 (176-229)||(9905104-9905157)
chr6 (172-220)||(2813340-2813388)
chr6 (134-165)||(14587620-14587651)
chr6 (134-165)||(23406864-23406895)
chr6 (297-363)||(2539434-2539499)
chr6 (313-359)||(31721915-31721961)
[»] scaffold0027 (1 HSPs)
scaffold0027 (172-318)||(142079-142224)
[»] scaffold0137 (1 HSPs)
scaffold0137 (172-316)||(9613-9757)
[»] scaffold0182 (1 HSPs)
scaffold0182 (172-312)||(23026-23165)
[»] scaffold0210 (1 HSPs)
scaffold0210 (263-358)||(8616-8711)
[»] scaffold0508 (1 HSPs)
scaffold0508 (172-283)||(3511-3624)
[»] scaffold0010 (1 HSPs)
scaffold0010 (247-330)||(140492-140576)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 172 - 364
Target Start/End: Complemental strand, 3936151 - 3935960
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||       ||| |||||||||||||||||| |    
T  3936151 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactcatttttt-cactctttaacaaaagaaaacatc 3936053  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
    |||||| |||||||||||| |||| ||||||| ||||||||||||||| ||||||| ||  | |||||||||| ||||||||||||||||||||    
T  3936052 attccggattatataatccggaatgctccgagggtaattttggaaaaa-atagggcacgtgaggaaagacataaggtagaaaaagtaatgctct 3935960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 172 - 368
Target Start/End: Original strand, 42877161 - 42877358
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaac-cgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||| |||||||||||||||||||||  | ||| | ||||||||||||||||||||| |||||||||       |||||||||||||||||||||| |    
T  42877161 aaacattatgtaacgcgccctattttttttattttcccgattacaaaatccggaaaaacacgttactcatttttt-caccctttaacaaaagaaaacatc 42877259  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg-aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctctaata 368  Q
    |||||| |||||||||||| |||| ||| ||| ||| |||||| ||||| ||||||||||| | ||||| |||| ||| | ||||||||||||||||||    
T  42877260 attccggattatataatccggaatgctctgagggtacttttggaaaaaaaatagggcgcgcgaggaaaggcatagggtgggaaaagtaatgctctaata 42877358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 172 - 311
Target Start/End: Original strand, 19225714 - 19225854
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa--ccgttactcannnnnnncaccctttaacaaaagaaaacac 269  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||  ||||||||||       ||||||||||||||||||||||     
T  19225714 aaacatcatgtaacgcaccctattttttgaagtttttggattacaaaatccggaaaaaatccgttactca-ttttttcaccctttaacaaaagaaaacat 19225812  T
Q  270 cattccgaattatataatccagaatactccgagagtaatttt 311  Q
    |||| ||||||||||||||  |||| ||| ||||||||||||    
T  19225813 catttcgaattatataatctggaatgctctgagagtaatttt 19225854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 43737167 - 43737060
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||    
T  43737167 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactca-ttttttcaccctttaacaaaagaaaacacc 43737069  T
Q  271 attccgaat 279  Q
    |||||||||    
T  43737068 attccgaat 43737060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 28230584 - 28230700
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||        |||||||||||||||||||||||    
T  28230584 aaacatcaagtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcatttttt--accctttaacaaaagaaaacacc 28230681  T
Q  271 attccgaattatataatcc 289  Q
    |||| | |||||| |||||    
T  28230682 attctggattataaaatcc 28230700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 47202537 - 47202427
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||        |||||| |||||||||||||||||    
T  47202537 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatctggaaaaatccgtaactc-catttttcaccctataacaaaagaaaacacc 47202439  T
Q  271 attccgaattat 282  Q
    |||||| |||||    
T  47202438 attccggattat 47202427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 42925757 - 42925897
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||        |||||| ||||||| |||||||||    
T  42925757 aaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatcaggaaaaacccgtaactc-catttttcaccctataacaaaggaaaacacc 42925855  T
Q  271 attccgaattatataatccagaatactccgagagtaattttg 312  Q
    |||||| |||||  ||||| |||| ||||||| |||||||||    
T  42925856 attccggattatgaaatccggaatgctccgagggtaattttg 42925897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 8154942 - 8154885
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8154942 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaa 8154885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 24042304 - 24042363
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24042304 aaacatcatgtaacgcgccttattttttgaagtttccggattacaaaatccggaaaaacc 24042363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 36468652 - 36468762
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||| |||||||||||||||||||| |  ||||||||||||||||||| ||||||||||       || ||||||||||||||||||| |    
T  36468652 aaacatcatgtaacacgccctattttttgaagtttccatattacaaaatccggaaaaatccgttactca-ttttttca-cctttaacaaaagaaaacatc 36468749  T
Q  271 attccgaattata 283  Q
    |||||||||||||    
T  36468750 attccgaattata 36468762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 5640070 - 5639973
Alignment:
Q  263 aaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatg 360  Q
    |||||| |||| ||||||||||||||| |||| ||||||  |||||||| |||||| ||||||||||| | |||||||||| ||||| ||||||||||    
T  5640070 aaaacagcatttcgaattatataatccggaatgctccgaaggtaattttagaaaaaaatagggcgcgcgaggaaagacatagggtaggaaaagtaatg 5639973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 36408414 - 36408314
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||       |||||||||||  |||||||||||    
T  36408414 aaacatcatgtatcgcgccttattttttgaagtttctggattacaaaatccggaaaaatccgttactcatttttttcaccctttaac--aagaaaacacc 36408317  T
Q  271 att 273  Q
    |||    
T  36408316 att 36408314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 9151850 - 9151789
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactca 239  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  9151850 atgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacctgttactca 9151789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 36629248 - 36629130
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaag-aaaacac 269  Q
    |||||||||||||||||||||||||||| |||||  | |||||||||||||||||||| ||||||||||       |||||| ||||||||| |||||||    
T  36629248 aaacatcatgtaacgcgccctatttttttaagttaccagattacaaaatccggaaaaatccgttactca-ttttttcaccctctaacaaaagaaaaacac 36629150  T
Q  270 cattccgaattatataatcc 289  Q
    ||||||  |||||| |||||    
T  36629149 cattccatattataaaatcc 36629130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 37518411 - 37518557
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||| ||||||||| ||||||||||||||||||||  |||||| |||||||||||||| |||||||| |       |||||||||| ||||||||||| |    
T  37518411 aaacttcatgtaacacgccctattttttgaagtttctggattataaaatccggaaaaatccgttactta-ttttttcaccctttaataaaagaaaacatc 37518509  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
    |||  | ||||||||||   |||| |||| ||| |||||||| |||||    
T  37518510 attttggattatataatatggaatgctccaagaataattttgaaaaaa 37518557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 33574150 - 33574200
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatcc 222  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  33574150 aaacatcatgtaacgcaccctattttttaaagtttccggattacaaaatcc 33574200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2611894 - 2611929
Alignment:
Q  1 cctgaatgtgatctagaataagaacagttgactata 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  2611894 cctgaatgtgatctagaataagaacagttgactata 2611929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 26555161 - 26555214
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||||||||||||   | |||||||||||||||||| |||||    
T  26555161 atcatgtaacgcgccctattttttgtgatattcggattacaaaatccgaaaaaa 26555214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 31985638 - 31985685
Alignment:
Q  176 atcatgtaacgcgcccta--ttttttgaagttttcggattacaaaatc 221  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  31985638 atcatgtaacgcgccctattttttttgaggttttcggattacaaaatc 31985685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 3304878 - 3304985
Alignment:
Q  176 atcatgtaacgcgccctatttt-ttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccatt 273  Q
    |||||||||| | ||||||||| |||||||||  ||||||||||||||||||||| |||| ||||        |||||| ||||||| ||||||||||||    
T  3304878 atcatgtaacacaccctatttttttgaagtttctggattacaaaatccggaaaaatccgtaactc-catttttcaccctataacaaaggaaaacaccatt 3304976  T
Q  274 ccgaattat 282  Q
    || ||||||    
T  3304977 ccaaattat 3304985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 24042248 - 24042279
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||||    
T  24042248 gaactgttttaccttgaaaaatggtgtttagg 24042279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 37218237 - 37218272
Alignment:
Q  188 gccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||||||||||||||||| ||||||||    
T  37218237 gccctattttttgaagttttcggattataaaatccg 37218272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 37518355 - 37518386
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||||    
T  37518355 gaactgttttaccttgaaaaatggtgtttagg 37518386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 26555086 - 26555120
Alignment:
Q  48 actaagaacatataacaatgacccaaaatagaagg 82  Q
    ||||||||||| |||||||||||||||||||||||    
T  26555086 actaagaacatgtaacaatgacccaaaatagaagg 26555120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 28349192 - 28349226
Alignment:
Q  195 tttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||| |||||||||||||||||||    
T  28349192 tttttgaagttttcgaattacaaaatccggaaaaa 28349226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 33151433 - 33151399
Alignment:
Q  48 actaagaacatataacaatgacccaaaatagaagg 82  Q
    |||||||||| ||||||||||||||||||||||||    
T  33151433 actaagaacagataacaatgacccaaaatagaagg 33151399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 31643084 - 31643027
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||| | |||||||||||||||||| |  ||||||| |||| ||||||    
T  31643084 aaacatcatgtaacacaccctattttttgaagtttccaaattacaagatccagaaaaa 31643027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 176 - 364
Target Start/End: Original strand, 44465843 - 44466031
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||       |||||||||||||||||||||| |||||    
T  44465843 atcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcatttttt-caccctttaacaaaagaaaacatcattc 44465941  T
Q  275 cgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
     | |||||||||||| |||||||||||||||||||||| ||||| ||||||||||| | |||||||||| | | | |||| |||||||||    
T  44465942 tggattatataatcctgaatactccgagagtaattttgaaaaaaaatagggcgcgcgaggaaagacataggatgggaaaaataatgctct 44466031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 172 - 363
Target Start/End: Original strand, 32187980 - 32188172
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||| ||||||||       |||||||||||||||||||||| |    
T  32187980 aaacatcatgtaactcgccctattttttgaagtttccagattacaaaatccagaaaaacccgttactcatttttttcaccctttaacaaaagaaaacatc 32188079  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||| |||||| ||||| |||| ||||||| ||||||||| ||||| |||||||| || | |||||||||| ||| | |||||||||||||    
T  32188080 attccggattatacaatccggaatgctccgagggtaattttgaaaaaaaatagggcgtgcgaggaaagacataaggtgggaaaagtaatgctc 32188172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 172 - 338
Target Start/End: Original strand, 33452554 - 33452720
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| ||||||||||       |||||||||||||||||||||| |    
T  33452554 aaacatcatgtaacgcgccctattttttgaagtttccgaattacaaaatccagaaaaatccgttactcatttttc-caccctttaacaaaagaaaacatc 33452652  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaag 338  Q
    ||| || |||||||||||| |||||||||||| ||||||||| ||||| |||| | |||||| |||||    
T  33452653 atttcggattatataatccggaatactccgagggtaattttgaaaaaaaatagagtgcgcaaggaaag 33452720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 172 - 360
Target Start/End: Original strand, 45153902 - 45154093
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||| ||||||||       |||||||||||||||||||||| |    
T  45153902 aaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcagaaaaacccgttactcatttttt-caccctttaacaaaagaaaacatc 45154000  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg---aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatg 360  Q
    |||||| |||||||||||| |||| ||| ||| ||||||||||   ||||| ||||||||||| | |||||| ||| ||| ||||||||||||    
T  45154001 attccggattatataatccggaatgctctgagggtaattttggagaaaaaaaatagggcgcgcgaggaaagatatagggtggaaaaagtaatg 45154093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 366
Target Start/End: Original strand, 41855010 - 41855196
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaaccgttactcannnnnnncaccctttaacaaaagaaaacacca 271  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||||||         |||||||       ||||||||||||| |||||||||||    
T  41855010 aaacatcatgtaacacaccctattttttgaagtttccggattacaaaatccg---------ttactcatttttt-caccctttaacaacagaaaacacca 41855099  T
Q  272 ttccgaattatataatccagaatactccgagagtaattttgg--aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctctaa 366  Q
    ||||| |||||||||||| |||| ||||||| ||||||||||  ||||| ||| ||||||| | |||||||||| ||| ||||||||||||||||||    
T  41855100 ttccggattatataatccggaatgctccgagggtaattttggaaaaaaaaataaggcgcgcgaggaaagacatagggtggaaaaagtaatgctctaa 41855196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 172 - 362
Target Start/End: Complemental strand, 39447205 - 39447009
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||||||||||||||| |    
T  39447205 aaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatccggaaaaatccgttactca-ttttttcaccctttaacaaaagaaaacatc 39447107  T
Q  271 attcc-----gaattatataatccagaatactccgagagtaatttt-ggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgct 362  Q
    |||||     | |||||||||||| |||| ||||||  |||||||| | ||||| |||  |||||| | ||||| || ||| | ||||||||||||||    
T  39447106 attccgttctggattatataatccggaatgctccgaaggtaattttagaaaaaaaataaagcgcgcgaggaaaggcaaatgatggaaaaagtaatgct 39447009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 17474910 - 17475055
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||       |||| |||||||||||||||||      
T  17474910 aaacatcatgtaacgcgccctattttttaaagtttccggattacaaaatccggaaaaatccgttactca-ttttttcaccttttaacaaaagaaaacatt 17475008  T
Q  271 att--ccgaattatataatccagaatactccgagagtaattttggaa 315  Q
    |||  ||| |||||||||||| |||| ||||||| ||||||||||||    
T  17475009 attccccggattatataatccggaatgctccgagggtaattttggaa 17475055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 41510539 - 41510653
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||       |||||||| |||||||||||||||    
T  41510539 aaacatcatgtaacgcgccctattttttgaagtttccggattacgaaatctggaaaaatccgttactcatttttttcacccttttacaaaagaaaacacc 41510638  T
Q  271 attccgaattatata 285  Q
    ||| || ||||||||    
T  41510639 atttcggattatata 41510653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 25217901 - 25218022
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||       |||||||||||||||||||||| |    
T  25217901 aaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccgaaaaaatccgttactca-ttttttcaccctttaacaaaagaaaacatc 25217999  T
Q  271 attccgaattatataatccagaa 293  Q
    ||| || |||||| |||||||||    
T  25218000 attgcggattataaaatccagaa 25218022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 15995224 - 15995342
Alignment:
Q  172 aaacatcatgtaacgcgccctatttt-ttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacac 269  Q
    |||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| |       |||||||||||||||||||||||    
T  15995224 aaacatcatgcaacgcgccctatttttttgaagtttcccgattacaaaatccggaaaaacccgttact-aattttttcaccctttaacaaaagaaaacac 15995322  T
Q  270 cattccgaattatataatcc 289  Q
    ||||||| |||||| |||||    
T  15995323 cattccggattataaaatcc 15995342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 4268349 - 4268408
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  4268349 aaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccgaaaaaacc 4268408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 36949056 - 36949166
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||        |||||| ||||||| |||||||||    
T  36949056 aaacatcatgtaacgcgccctattttttgaagtttgcagattacaaaatccggaaaaatccgtaactc-catttttcaccctataacaaaggaaaacacc 36949154  T
Q  271 attccgaattat 282  Q
    |||||| |||||    
T  36949155 attccggattat 36949166  T

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Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 263 - 367
Target Start/End: Complemental strand, 35739594 - 35739490
Alignment:
Q  263 aaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgct 362  Q
    |||||||||||||| |||||||||||| ||||||| | || ||||||||| ||||| ||||||||||| |  ||||| ||||||| | |||| |||||||    
T  35739594 aaaacaccattccggattatataatccggaatacttcaagggtaattttgaaaaaaaatagggcgcgcgagtaaagaaatatggtgggaaaaataatgct 35739495  T
Q  363 ctaat 367  Q
    |||||    
T  35739494 ctaat 35739490  T

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Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 36875028 - 36874977
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  36875028 aaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccg 36874977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 9847540 - 9847593
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||| |||||||||  |||||||||||||||||| |||||||    
T  9847540 atcatgtaacgcgcccaattttttgagattttcggattacaaaatctggaaaaa 9847593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 363
Target Start/End: Original strand, 4268412 - 4268481
Alignment:
Q  294 tactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    ||||||||  ||||||||||||||| ||||||||| | |  ||||||||| ||| |||||||||||||||    
T  4268412 tactccgaaggtaattttggaaaaaaatagggcgcacgagaaaagacataaggtggaaaaagtaatgctc 4268481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 5507455 - 5507402
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||| | |||||||||||||||| |||||||||||| || |||||    
T  5507455 atcatgtaacgcgtcttattttttgaagtttttggattacaaaattcgaaaaaa 5507402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 34517140 - 34517087
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||  ||||  |||||||||||||| |||||    
T  34517140 atcatgtaacgcgccctattttttgagatttttcgattacaaaatccgaaaaaa 34517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 38308918 - 38308954
Alignment:
Q  185 cgcgccctattttttgaagttttcggattacaaaatc 221  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38308918 cgcgccctattttttgaagttttcggattacataatc 38308954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 33366966 - 33366920
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  33366966 atcatgtaacgcgtcttattttt-gaagttttcggattacaaaatccg 33366920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 42894420 - 42894369
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||||||| |||||||||| |||||| ||||||| | ||||||    
T  42894420 aaacatcatgtaacgcgtcctatttttttaagtttccggattatataatccg 42894369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 25715331 - 25715289
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatcc 289  Q
    |||||||||||||| ||||||||||||||| |||||| |||||    
T  25715331 caccctttaacaaaggaaaacaccattccggattataaaatcc 25715289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 38066788 - 38066834
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatcc 222  Q
    ||||| |||| | |||||||||||||||||||||||||| |||||||    
T  38066788 atcatataacacaccctattttttgaagttttcggattataaaatcc 38066834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 39447392 - 39447358
Alignment:
Q  48 actaagaacatataacaatgacccaaaatagaagg 82  Q
    ||||||||||| |||||||||||||||||||||||    
T  39447392 actaagaacatgtaacaatgacccaaaatagaagg 39447358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 27610080 - 27610113
Alignment:
Q  367 taaattttgcatgtggggtttgagggtgttacaa 400  Q
    ||||| ||||||||||||||||||||||||||||    
T  27610080 taaatattgcatgtggggtttgagggtgttacaa 27610113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 42894474 - 42894445
Alignment:
Q  136 actgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||    
T  42894474 actgttttaccttgaaaaatggtgtttagg 42894445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 32187924 - 32187952
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgttt 162  Q
    |||||||||||||||||||||||||||||    
T  32187924 gaactgttttaccttgaaaaatggtgttt 32187952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 172 - 366
Target Start/End: Complemental strand, 19835571 - 19835376
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||| ||||||||       |||||||||||||||||||||| |    
T  19835571 aaacatcatgtaacgcaccctatttttcaaagtttccggattacaaaatccggaaaaacccgttactcatttttt-caccctttaacaaaagaaaacatc 19835473  T
Q  271 attccgaattatataatccagaatactccgagagtaattttg-gaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctctaa 366  Q
    |||||| |||||||||||| |||| |||||||||||||||||  ||||| ||||||||||| | ||||||||||  || ||||||||||||||||||    
T  19835472 attccggattatataatccggaatgctccgagagtaattttgaaaaaaaaatagggcgcgcgaagaaagacatagagtggaaaaagtaatgctctaa 19835376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 173 - 364
Target Start/End: Original strand, 53894108 - 53894299
Alignment:
Q  173 aacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacca 271  Q
    |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| |||| |||       |||||||||||||||||||||| ||    
T  53894108 aacatcatgtaacgcgccctattttttgaagtttcctgattgcaaaatccggaaaaacccgttagtcatttttt-caccctttaacaaaagaaaacatca 53894206  T
Q  272 ttccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
    ||||| |||||||||| | |||| |||||||  |||||||||||||| ||||||||||| | ||||| |||| ||| | ||||||||||||||    
T  53894207 ttccggattatataattcggaatgctccgaggataattttggaaaaaaatagggcgcgcgaggaaaggcatagggtgggaaaagtaatgctct 53894299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 172 - 359
Target Start/End: Original strand, 25491511 - 25491698
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaac-cgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||       |||||||||||||||||||||| |    
T  25491511 aaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaactcgttactca-ttttttcaccctttaacaaaagaaaacatc 25491609  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaat 359  Q
    |||||| ||||||||||   |||| ||||||   |||||||||||||| |||||| |||| | ||||||| || ||| |||||||||||    
T  25491610 attccggattatataattttgaatgctccgaagataattttggaaaaaaatagggtgcgcgaggaaagacgtagggtggaaaaagtaat 25491698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 48319181 - 48319369
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||       |||||||||||||||||||||| |    
T  48319181 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaa-tccggaaaaatccgtcactcatttttt-caccctttaacaaaagaaaacatc 48319278  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgct 362  Q
    |||  | |||| ||||||| |||| || |||| ||||||||||||||| ||||||||||| | |||| ||||| ||| | ||||||||||||    
T  48319279 attgtggattaaataatccggaatgcttcgagggtaattttggaaaaa-atagggcgcgcgaggaaatacatagggtgggaaaagtaatgct 48319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 172 - 342
Target Start/End: Complemental strand, 7931709 - 7931541
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||       ||||||||||||||||||||   |    
T  7931709 aaacataatgtaacgcgccctattttttgaagtttccggattgcaaaatccggaaaaacccgttactca-ttttttcaccctttaacaaaagaaaa---c 7931614  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg-aaaaagatagggcgcgcaatgaaagacat 342  Q
    |||||| |||||||||||| |||| ||| ||  |||||||||| ||||| ||||||||||| | |||||||||    
T  7931613 attccggattatataatccggaatgctctgacggtaattttggaaaaaaaatagggcgcgcgaggaaagacat 7931541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 366
Target Start/End: Complemental strand, 40703715 - 40703515
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||| ||||||||||       |||||||||| ||||||||||| |    
T  40703715 aaacatcatgtaatgcaccctattttttgaaatttccggattacaaaatccggaaaaatccgttactcattcttttcaccctttaaaaaaagaaaacatc 40703616  T
Q  271 attccgaattatataatccagaatactccgagagtaattttg-------gaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||  ||||||| || | |||| ||||||| |||||||||        ||||| ||||||||||  | |||||||||| ||| |||||||||||||||    
T  40703615 attccagattatattattcggaatgctccgagggtaattttgaaaagaaaaaaaaaatagggcgcg--aggaaagacatagggtggaaaaagtaatgctc 40703518  T
Q  364 taa 366  Q
    |||    
T  40703517 taa 40703515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 311
Target Start/End: Original strand, 17933253 - 17933392
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||| |||       |||||||||||||||||||||| |    
T  17933253 aaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatctggaaaaatccgttattca-tttttgcaccctttaacaaaagaaaacatc 17933351  T
Q  271 attccgaattatataatccagaatactccgagagtaatttt 311  Q
    |||||  |||||||||||| |||| ||||||  ||||||||    
T  17933352 attccagattatataatccggaatgctccgaaggtaatttt 17933392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 54631579 - 54631696
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||       |||||||||||||||||||||  |    
T  54631579 aaacatcatgtaacgcgccatactttttgaagtttccggattacaaaatccggaaaaacccgttactca-tttttccaccctttaacaaaagaaaacgtc 54631677  T
Q  271 attccgaattatataatcc 289  Q
    |||||| ||||||||||||    
T  54631678 attccggattatataatcc 54631696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 46440390 - 46440507
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||| |||||||||| |||||| ||||||| ||||| |||||||||| |||| |||       || ||||||||||||||| ||| |    
T  46440390 aaacatcatgtaacgcgtcctatttttttaagtttccggattataaaattcggaaaaacccgttattcatttttttcatcctttaacaaaagaatacatc 46440489  T
Q  271 attccgaattatataatc 288  Q
    ||||||||||||||||||    
T  46440490 attccgaattatataatc 46440507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 6228927 - 6228984
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  6228927 aaacatcatgtaacgcgccctattttttgaagtttccgggttacaaaatccggaaaaa 6228984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 8106439 - 8106387
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaa 228  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8106439 atcatgtagcgcgccctattttttgaagttttcggattacaaaatccggaaaa 8106387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 29822670 - 29822477
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||| |||| ||||        |||||| |||| |||| |||||||    
T  29822670 aaacatcatgtaacgcgctgtattttttgaagtttccggattacaaaatccggaaaaacccgtaactc-catttttcaccctataac-aaaggaaacacc 29822573  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaa---gatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||  |||||  ||||| |||| |||||||  ||||||||||||||    |||||| |||||| ||||| | || |||  ||||||||||||||    
T  29822572 attccatattatgaaatccggaatgctccgaggataattttggaaaaaaagaatagggtgcgcaaggaaaggcttagggtgtaaaaagtaatgctc 29822477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 25539064 - 25539123
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  25539064 aaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaacc 25539123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 38536221 - 38536162
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  38536221 aaacatcatgtaacacgccctattttttgaagtttccgaattacaaaatccggaaaaacc 38536162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 23523957 - 23523847
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||| ||||        |||||| ||||||| ||||||| |    
T  23523957 aaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaatccgtaactc-catttttcaccctctaacaaaggaaaacatc 23523859  T
Q  271 attccgaattat 282  Q
    ||||||||||||    
T  23523858 attccgaattat 23523847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 25752560 - 25752617
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||    
T  25752560 aaacatcatgtaatgcgccctattttttgaaatttccggattacaaaatccggaaaaa 25752617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 32441862 - 32441805
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  32441862 aaacatcatgtaacgcgcgctattttttgaagtttccggattacaaaatccagaaaaa 32441805  T

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Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 18051125 - 18051240
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatgg 346  Q
    |||||||||||||||||||||| ||||||  |||||||||||  |||| |||||||  |||||||| ||||| ||| |||| || | ||||| |||| ||    
T  18051125 caccctttaacaaaagaaaacatcattccagattatataatctggaatgctccgaggataattttgaaaaaaaataaggcgtgcga-gaaaggcataggg 18051223  T
Q  347 tagaaaaagtaatgctc 363  Q
    | |||||||||||||||    
T  18051224 tggaaaaagtaatgctc 18051240  T

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Target: chr4; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 55052735 - 55052794
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  55052735 aaacatcatctaacacgccctattttttgaagtttccggattacataatccggaaaaacc 55052794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 31582555 - 31582669
Alignment:
Q  249 ccctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggta 348  Q
    |||| ||||||| |||||||| |||||| |||||  |||||| ||| |||  || ||||||||||||||| ||||| ||||||| ||||| |||| |||     
T  31582555 ccctataacaaaggaaaacacaattccggattatgaaatccaaaatgctctaagggtaattttggaaaaaaataggacgcgcaaggaaaggcatagggtg 31582654  T
Q  349 gaaaaagtaatgctc 363  Q
    | |||||||||||||    
T  31582655 ggaaaagtaatgctc 31582669  T

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Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 3703370 - 3703423
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||| || |||||||||||||||||||||||||||||||||| |||||    
T  3703370 atcatgtaacacgtcctattttttgaagttttcggattacaaaatccgaaaaaa 3703423  T

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Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 49397059 - 49397002
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||| ||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  49397059 aaacatcttgtaacgcatcctattttttgaagtttccggattacaaaatccggaaaaa 49397002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 50392529 - 50392635
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    |||||||||||||||| |||||||||  ||| |||||||||||||||||||||| |||| |||||       ||| |||||||||| ||||||||| |||    
T  50392529 atcatgtaacgcgccccattttttgagatttccggattacaaaatccggaaaaatccgtaactcatttttttcactctttaacaaaggaaaacaccgttc 50392628  T
Q  275 cgaatta 281  Q
    || ||||    
T  50392629 cggatta 50392635  T

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Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 34972915 - 34972864
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||||||||    
T  34972915 aaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccg 34972864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 35420801 - 35420715
Alignment:
Q  278 attatataatccagaatactccgagagtaattttgga--aaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgct 362  Q
    |||||||||||| |||| ||||||| |||||||||||  |||| ||||||||||| | |||||||||| ||| | ||||||||||||    
T  35420801 attatataatccggaatgctccgagtgtaattttggaaaaaaaaatagggcgcgcgaggaaagacatagggtgggaaaagtaatgct 35420715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 2506147 - 2506250
Alignment:
Q  172 aaacatcatgtaacgcgccct-attttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacac 269  Q
    ||||||||||||||||||||| ||||||||| ||||  | || |||||||  ||||||| ||||||||||       ||||||||||||||||||||||     
T  2506147 aaacatcatgtaacgcgcccttattttttgatgtttctgaatcacaaaatttggaaaaatccgttactcatttttttcaccctttaacaaaagaaaacat 2506246  T
Q  270 catt 273  Q
    ||||    
T  2506247 catt 2506250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 42660449 - 42660544
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacata 343  Q
    |||||||||||||| |||||||| |||| | |||||| ||||| ||| ||| | || ||| ||||||||||| ||||||||||| | ||||| ||||    
T  42660449 caccctttaacaaaggaaaacactattctggattataaaatccggaa-acttcaagggtatttttggaaaaatatagggcgcgcgaggaaaggcata 42660544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 53668758 - 53668813
Alignment:
Q  263 aaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
    |||||||||||||| |||||||||||| || | |||||||  ||||||||||||||    
T  53668758 aaaacaccattccggattatataatccggattgctccgaggataattttggaaaaa 53668813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 5865208 - 5865248
Alignment:
Q  183 aacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  5865208 aacgcgccctattttttgaaattttcagattataaaatccg 5865248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 11244844 - 11244812
Alignment:
Q  367 taaattttgcatgtggggtttgagggtgttaca 399  Q
    ||||| |||||||||||||||||||||||||||    
T  11244844 taaatattgcatgtggggtttgagggtgttaca 11244812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 38416612 - 38416568
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaat 220  Q
    ||||||||||| |||||||||||| | |||| |||||||||||||    
T  38416612 atcatgtaacgtgccctatttttttatgtttccggattacaaaat 38416568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 179 - 364
Target Start/End: Original strand, 42281017 - 42281202
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattccga 277  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||       ||||||||||||||| |||||| |||||||     
T  42281017 atgtaacgcgctctattttttgaagttttcggattacgaaatccggaaaaatccgttactcatttttt-caccctttaacaaaaaaaaacatcattccgg 42281115  T
Q  278 attatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
    |||||||||| | ||||  ||| || ||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||    
T  42281116 attatataattcggaatgttccaagggtaattttggaaaaaaatagggcgcgcgaggaaagacatatggtggaaaaagtaatgctct 42281202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 172 - 364
Target Start/End: Original strand, 8885569 - 8885760
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||       ||| |||||||||||||||||| |    
T  8885569 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactca-ttttttcactctttaacaaaagaaaacatc 8885667  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
    |||||| |||||||||||| ||||  |||||| |||||||| |||||| |||||||| || | ||||  |||| ||| | ||||||||||||||    
T  8885668 attccggattatataatccggaatggtccgagggtaattttagaaaaa-atagggcgtgcgaggaaaagcatagggtgggaaaagtaatgctct 8885760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 172 - 314
Target Start/End: Complemental strand, 34853372 - 34853231
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaaccgttactcannnnnnncaccctttaacaaaagaaaacacca 271  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||        |||||||||||||| |||||| ||    
T  34853372 aaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaacccgtactcattttctt-accctttaacaaaataaaacatca 34853274  T
Q  272 ttccgaattatataatccagaatactccgagagtaattttgga 314  Q
    ||||||||||||||||   |||| ||||||| |||||||||||    
T  34853273 ttccgaattatataatttggaatgctccgagtgtaattttgga 34853231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 28916826 - 28916662
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||       |||||||||||||||||||||| |    
T  28916826 aaacatcatttaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttaccca-ttttttcaccctttaacaaaagaaaacatc 28916728  T
Q  271 at------tccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgc 330  Q
    ||      |||| |||||||||||| |||| |||||||| |||||||| ||||| ||||| |||||    
T  28916727 attccggatccggattatataatccggaatgctccgagaataattttgaaaaaaaataggacgcgc 28916662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 44106266 - 44106164
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||       ||||||||||||||||||||||||    
T  44106266 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatccgttactca-ttttttcaccctttaacaaaagaaaacacc 44106168  T
Q  271 attc 274  Q
    ||||    
T  44106167 attc 44106164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 27928057 - 27928153
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaaca 268  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||    
T  27928057 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactca-ttttttcaccctttaacaaaagaaaaca 27928153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 172 - 359
Target Start/End: Complemental strand, 3094724 - 3094533
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||        |||||| ||||||| |||||||||    
T  3094724 aaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactc-catttttcaccctataacaaaggaaaacacc 3094626  T
Q  271 attccgaattatataatccagaatactccgagagtaatttt----ggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaat 359  Q
    ||||||||||||  ||| | |||| |||| |  ||||||||     |||||| |||||| |||| | |||||||||| ||||| |||||||||    
T  3094625 attccgaattattaaatgcggaatgctccaaaggtaattttagaaagaaaaaaatagggggcgcgaggaaagacatagggtaggaaaagtaat 3094533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 9073547 - 9073404
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||   | ||||||||||||||| |||||||  ||||||| ||||  ||||||||||        ||||||||||||||||||||| |    
T  9073547 aaacatcatgtaacgaatcttattttttgaagtttccggattaacaaatccgaaaaagtccgttactcatttttta-accctttaacaaaagaaaacatc 9073449  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaa 315  Q
    ||| ||||||||||||||| |||||||||||  ||||||||||||    
T  9073448 atttcgaattatataatccggaatactccgaaggtaattttggaa 9073404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 41530708 - 41530591
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| |||||||| |||| |||||       |||||||||||||| ||||||| |||||    
T  41530708 atcatgtaacgcgccctattttttgagatttccggattacaaaattcggaaaaatccgtaactca-tttttccaccctttaacaaaggaaaacatcattc 41530610  T
Q  275 cgaattatataatccagaa 293  Q
    || |||||| |||||||||    
T  41530609 cggattataaaatccagaa 41530591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 27928298 - 27928397
Alignment:
Q  255 aacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaa 354  Q
    ||||||| |||||| ||||||  |||||||||||| |||| ||||||| |||||||| |||||| ||||||||||| | |||||||||| ||| ||||||    
T  27928298 aacaaaaaaaaacatcattcccgattatataatccggaatgctccgagggtaattttagaaaaaaatagggcgcgcgaggaaagacatagggtggaaaaa 27928397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 37248601 - 37248542
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  37248601 aaacatcatctaacgcgccctatttttttaagttttcggattacaaaatccagaaaaacc 37248542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 40994787 - 40994716
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||  ||||||| |||||||||||||||    
T  40994787 caccctttaacaaaagaaaacatcattccggattatataatccggaaagctccgagggtaattttggaaaaa 40994716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 31520008 - 31520065
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  31520008 aaacatcatgtaacgcgctctattttttgaagtttctggattacaaaatccggaaaaa 31520065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 16310638 - 16310583
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  16310638 atcatctaacgcaccctattttttgaagtttccggattacaaaatccggaaaaacc 16310583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 36404274 - 36404387
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaa-aaaccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||||| || |||| |||||       |||||||||||||| | |||| ||||||    
T  36404274 atcatgtaacacgccctattttttgagattttcggattacaaaatccggaataatccgtaactca-ttttttcaccctttaacaaagggaaactccattc 36404372  T
Q  275 cgaattatataatcc 289  Q
    || |||||| |||||    
T  36404373 cggattataaaatcc 36404387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 21004426 - 21004323
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattccga 277  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||||||| |||| ||||        |||||| ||||||| |||||||||||||||     
T  21004426 atgtaacgcgccttattttttaaagtttccggattacaaaatccggaaaaatccgtaactc-catttttcaccctataacaaaggaaaacaccattccgg 21004328  T
Q  278 attat 282  Q
    |||||    
T  21004327 attat 21004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 35676658 - 35676711
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||| || |||||||||||||||| ||||| ||||||||||||||||||||||    
T  35676658 atcatatagcgcgccctattttttgtagtttccggattacaaaatccggaaaaa 35676711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 5196131 - 5196051
Alignment:
Q  263 aaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacata 343  Q
    |||||| ||||||| |||||||||||  || | |||||||| ||||||| |||||| ||||||||||| | ||||||||||    
T  5196131 aaaacatcattccggattatataatctggattgctccgagaataattttagaaaaaaatagggcgcgcgaggaaagacata 5196051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 11698402 - 11698451
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatc 221  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  11698402 aaacatcatgtaacacgtcttattttttgaagtttccggattacaaaatc 11698451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 27928001 - 27928032
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||||    
T  27928001 gaactgttttaccttgaaaaatggtgtttagg 27928032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 10840881 - 10840923
Alignment:
Q  181 gtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||| |||||||||||||||| |||||||||||| ||||||||    
T  10840881 gtaatgcgccctattttttgaggttttcggattataaaatccg 10840923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 37248656 - 37248626
Alignment:
Q  135 aactgttttaccttgaaaaatggtgtttagg 165  Q
    |||||||||||||||||||||||||||||||    
T  37248656 aactgttttaccttgaaaaatggtgtttagg 37248626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 202
Target Start/End: Complemental strand, 40994835 - 40994805
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaa 202  Q
    |||||||||||||||||||||||||||||||    
T  40994835 aaacatcatgtaacgcgccctattttttgaa 40994805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 7971114 - 7971170
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||| ||| |||| |||||||| |||||||| | ||||||||||||||||||||    
T  7971114 aaacatcacgtagcgcgtcctatttt-tgaagtttccagattacaaaatccggaaaaa 7971170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 17120009 - 17120053
Alignment:
Q  185 cgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||| |||||||||||||||||||||| | |||||| |||||    
T  17120009 cgcgcccaattttttgaagttttcggattatataatccgaaaaaa 17120053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 40392562 - 40392526
Alignment:
Q  187 cgccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  40392562 cgccctattttttgaagtttttggattataaaatccg 40392526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 179 - 369
Target Start/End: Original strand, 31929229 - 31929418
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattccga 277  Q
    |||||| ||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||       |||||||||||||||||||||| |||||||     
T  31929229 atgtaatgcgccctattttttgaaatttctggattacaaaatccggaaaaatccgttactcattttt--caccctttaacaaaagaaaacatcattccgg 31929326  T
Q  278 attatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctctaataa 369  Q
    |||||||||||| |||| ||||||| ||||||||| ||||| ||||||||| | | |||| ||||| ||| |||||||||||||||||||||    
T  31929327 attatataatccggaatgctccgagggtaattttgaaaaaaaatagggcgcacgaggaaaaacataaggtggaaaaagtaatgctctaataa 31929418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 172 - 364
Target Start/End: Original strand, 38692898 - 38693093
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa--ccgttactcannnnnnncaccctttaacaaaagaaaacac 269  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||  ||||||||||       ||||||||||||||||||||||     
T  38692898 aaacatcacgtaacgcgccctatttttttaagtttccggattacaaaattcggaaaaaacccgttactcatttttt-caccctttaacaaaagaaaacat 38692996  T
Q  270 cattccgaattatataatccagaatactccgagagtaattttg--gaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
    ||||||| |||||||||||| |||| ||||||| |||||||||   ||||| ||||||||||| | ||||| |||| ||| | ||||||||||||||    
T  38692997 cattccggattatataatccggaatgctccgagggtaattttgaaaaaaaaaatagggcgcgcgaagaaagccatagggtgggaaaagtaatgctct 38693093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 6156736 - 6156545
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||        |||| | ||||||| |||||||||    
T  6156736 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactc-catttttcaccatataacaaaggaaaacacc 6156638  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||| |||||  ||||| |||| ||||||| ||||||||||||||| ||||| ||||| | |||||||||| ||| ||||||  |||||||    
T  6156637 attccggattatgaaatccggaatgctccgagggtaattttggaaaaaaataggacgcgcgaggaaagacataaggtggaaaaaaaaatgctc 6156545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 324
Target Start/End: Original strand, 28083498 - 28083646
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||       |||||||||||||||||||||| |||||    
T  28083498 atcatgtaatgcgccctattttttgaattttccggattacaaaatccggaaaaacccgttactcattttct-caccctttaacaaaagaaaacatcattc 28083596  T
Q  275 cgaattatataatccagaatactccgagagtaattttggaaaaagatagg 324  Q
    || |||||||||||||||||||||| ||  |||||||||||||| |||||    
T  28083597 cggattatataatccagaatactccaaggataattttggaaaaaaatagg 28083646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 172 - 359
Target Start/End: Complemental strand, 15799230 - 15799043
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||        |||||| ||||||| ||||| |||    
T  15799230 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactc-catttttcaccctataacaaaggaaaatacc 15799132  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaat 359  Q
    |||||| |||||  ||||| |||| ||| ||  ||||||||||||||| ||||||| ||| |  |||| |||| ||| | |||||||||    
T  15799131 attccggattatgaaatccggaatgctcagatggtaattttggaaaaaaatagggctcgcgagtaaaggcatagggtgggaaaagtaat 15799043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 40620106 - 40620267
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| | ||||||||       ||||||| |||||||||||||| |    
T  40620106 aaacatcatataacgtgccctattttttgaagtttccggattacaaaatccggaaaaatctgttactca-ttttttcacccttcaacaaaagaaaacatc 40620204  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg---aaaaagatagggcgcgc 330  Q
    |||  | |||||||||||  |||| ||||||| ||||||||||   ||||| |||||||||||    
T  40620205 attatggattatataatctggaatgctccgagggtaattttggagaaaaaaaatagggcgcgc 40620267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 20891618 - 20891500
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||||||||       |||| ||||| |||||||||||||    
T  20891618 aaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcatttttttcaccatttaataaaagaaaacacc 20891519  T
Q  271 attccgaattatataatcc 289  Q
    ||| || |||||| |||||    
T  20891518 atttcggattataaaatcc 20891500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 38871676 - 38871559
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||        ||  |||||||||||||||||||    
T  38871676 aaacatcatgtaacgccccctattttatgaagttttcggattacaaaatccggaaaaatccgttactcatttttta-actttttaacaaaagaaaacacc 38871578  T
Q  271 attccgaattatataatcc 289  Q
    |||||| |||||| |||||    
T  38871577 attccggattataaaatcc 38871559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 39524781 - 39524611
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| || || ||||       |||||||||||||||||||||| |    
T  39524781 aaacatcatgtaacacgccctatttttttaagtttccggattacaaaatccggaaaaatccattgctca-ttttttcaccctttaacaaaagaaaacatc 39524683  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacata 343  Q
    ||| || |||| ||||| | |||| ||||||   ||||||| |||||| ||||| ||||||| ||||| ||||    
T  39524682 atttcggattacataattcggaatgctccgaagataatttt-gaaaaaaataggacgcgcaaggaaaggcata 39524611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 33487615 - 33487556
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33487615 aaacatcatataacgcgccctattttttgaagttttcggattacaaaattcggaaaaacc 33487556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 360
Target Start/End: Complemental strand, 28108309 - 28108199
Alignment:
Q  250 cctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtag 349  Q
    ||||||||||||||||||| ||||||| |||||||||||  |||| |||||||  |||||||||||||| ||||| ||| | |  ||||||||| ||| |    
T  28108309 cctttaacaaaagaaaacatcattccggattatataatctggaatgctccgaggataattttggaaaaaaataggacgcacgagaaaagacatagggtgg 28108210  T
Q  350 aaaaagtaatg 360  Q
    |||||||||||    
T  28108209 aaaaagtaatg 28108199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 12465222 - 12465279
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  12465222 aaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaa 12465279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 26190414 - 26190471
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26190414 aaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccggaaaaa 26190471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 15957754 - 15957638
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||  |||||||||||| ||||||| || ||||||||||||||||||| || |||||||       ||||||||||||||||||||||||    
T  15957754 aaacatcatgtaatacgccctatttttcgaagtttccgaattacaaaatccggaaaaatccattactca--tttttcaccctttaacaaaagaaaacacc 15957657  T
Q  271 attccgaattatataatcc 289  Q
    ||| || |||||| |||||    
T  15957656 atttcggattataaaatcc 15957638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 25747030 - 25746915
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||       || | ||||||||||||||||| |    
T  25747030 aaacatcatgtaacgcgccctattttt-gaagtttccggattagaaaatccggaaaaatccgttactca-ttttttca-cttttaacaaaagaaaacatc 25746934  T
Q  271 attccgaattatataatcc 289  Q
    ||||||||||||| |||||    
T  25746933 attccgaattataaaatcc 25746915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 37095031 - 37095087
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  37095031 aaacatcatgtaacgcgccttatttttt-aagttttcggattacaaaatccggaaaaa 37095087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 38372314 - 38372246
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactca 239  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  38372314 aaacatcatgtaacccgccctatttttttaagtttccggattacaaaatccagaaaaatccgttactca 38372246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 14111902 - 14111851
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  14111902 aaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatccg 14111851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 24203800 - 24203913
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||| ||||| | |||| |||       ||||||||||||||||||||||||    
T  24203800 aaacatcatgtaacgcgccctattttttgaagtc----gattacaaaatccgaaaaaatctgttaatcatttttc-caccctttaacaaaagaaaacacc 24203894  T
Q  271 attccgaattatataatcc 289  Q
    |||||| |||||| |||||    
T  24203895 attccggattataaaatcc 24203913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 31221455 - 31221504
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatc 221  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  31221455 aaacatcatgtaacgcgccatattttttgaagttttcggattacagaatc 31221504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 37183902 - 37184028
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    ||||||||||| |||||||||||||||||||   ||||||||||||  |||||| | ||||||||       ||||| ||||||||||||||||  ||||    
T  37183902 atcatgtaacgtgccctattttttgaagtttcaagattacaaaatctagaaaaatctgttactcatttttt-cacccgttaacaaaagaaaacattattc 37184000  T
Q  275 cgaattatataatccagaatactccgag 302  Q
    || |||||||||||| |||| |||||||    
T  37184001 cggattatataatccggaatgctccgag 37184028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 32842101 - 32842145
Alignment:
Q  185 cgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  32842101 cgcgccctattttttgaagtttccggattacaaaatccggaaaaa 32842145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 4064836 - 4064895
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    ||||||||| |||| ||||||||||||| |||||| ||||||||| ||||||||||||||    
T  4064836 aaacatcatctaacacgccctattttttaaagtttccggattacataatccggaaaaacc 4064895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 27212709 - 27212654
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    |||||||||||| |||||||||||||  |||||||||||||||||||| |||||||    
T  27212709 atcatgtaacgcaccctattttttgagattttcggattacaaaatccgaaaaaacc 27212654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 34440738 - 34440688
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  34440738 aaacatcatgtaacgcgtcctattttt-gaagttttcggattacaaaatccg 34440688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 26319122 - 26319013
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||| |||||||||  ||||||| ||||| |||||||||||||||| |||| ||||        |||||| ||||||| |||||||||    
T  26319122 aaacatcatgtaacgcaccctattttg-gaagtttccggataacaaaatccggaaaaatccgtaactc-catttttcaccctataacaaaggaaaacacc 26319025  T
Q  271 attccgaattat 282  Q
    ||||||||||||    
T  26319024 attccgaattat 26319013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 34530029 - 34529976
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||| |||||    
T  34530029 atcatgtaacacgccctattttttgaggtttttggattacaaaatccgaaaaaa 34529976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 29862673 - 29862642
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||||    
T  29862673 gaactgttttaccttgaaaaatggtgtttagg 29862642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 11186303 - 11186341
Alignment:
Q  183 aacgcgccctattttttgaagttttcggattacaaaatc 221  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  11186303 aacgcgccctattttttgaggttttcggattataaaatc 11186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 369
Target Start/End: Complemental strand, 23348427 - 23348334
Alignment:
Q  278 attatataatccagaatactccgagagtaattttgga--aaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctctaataa 369  Q
    |||| ||||||| |||| ||||||| |||||||||||  |||| ||||||||||| | ||||| |||| ||| | |||||||||  ||||||||    
T  23348427 attacataatccggaatgctccgagggtaattttggaaaaaaaaatagggcgcgctaggaaaggcatagggtgggaaaagtaatagtctaataa 23348334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 28445540 - 28445578
Alignment:
Q  185 cgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28445540 cgcgccctattttttgagattttcggattacaaaatccg 28445578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 8032272 - 8032219
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||| | ||||||||||||||| ||| | |||||||||||||| |||||    
T  8032272 atcatgtaatgtgccctattttttgaaatttccagattacaaaatccgaaaaaa 8032219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 20231114 - 20231031
Alignment:
Q  278 attatataatccagaatactccgagagtaattttggaaaaaga--tagggcgcgcaatgaaagacatatggtagaaaaagtaat 359  Q
    |||| ||||||  |||| ||||||| ||||||||||||||| |  |||||||||| | |||||||||| |||  ||||||||||    
T  20231114 attacataatctggaatgctccgagggtaattttggaaaaaaaaatagggcgcgcgaggaaagacataaggtgaaaaaagtaat 20231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 172 - 365
Target Start/End: Original strand, 32817727 - 32817919
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||       |||||||||||||||||||||| |    
T  32817727 aaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatctggaaaaacccgttactcatttttt-caccctttaacaaaagaaaacatc 32817825  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctcta 365  Q
    |||||| |||||||||||| |||| ||||||| |||||||| |||| | ||||||||||| | ||||| |||| ||| | |||||||||||||||    
T  32817826 attccggattatataatccggaatgctccgagggtaatttt-gaaataaatagggcgcgcgaggaaaggcatagggtgggaaaagtaatgctcta 32817919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 42546010 - 42545839
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||       ||||||||||||||||| ||||||    
T  42546010 aaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccggaaaaatccgttattcattttt--caccctttaacaaaagataacacc 42545913  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgga-aaaagatagggcgcgcaatgaaagacata 343  Q
    |||||| |||||||||||  |||| ||||||| ||||||||||| |||| ||||||||||| | ||||| ||||    
T  42545912 attccggattatataatctggaatgctccgagggtaattttggaaaaaaaatagggcgcgcgaggaaaggcata 42545839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 172 - 362
Target Start/End: Complemental strand, 7011253 - 7011062
Alignment:
Q  172 aaacatcatgtaacgcgccctatttttt-gaagttttcggattacaaaatccggaaaaa--ccgttactcannnnnnncaccctttaacaaaagaaaaca 268  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||  ||||||||||       ||||||||||||| ||||||||    
T  7011253 aaacatcatgtaacgcgccctttttttttgaagtttccggattacaaaatccagaaaaaatccgttactcattttt--caccctttaacaatagaaaaca 7011156  T
Q  269 ccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgct 362  Q
    || ||||||||||||||||   |||| ||||||| |||||||| |||||| ||||| ||||  | |||||||||| ||| ||||||||||||||    
T  7011155 cctttccgaattatataatatggaatgctccgagggtaattttagaaaaaaataggacgcgtgaggaaagacatagggtggaaaaagtaatgct 7011062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 172 - 358
Target Start/End: Original strand, 40650791 - 40650981
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||       ||| ||||||||||||||||||||    
T  40650791 aaacatcatgtaacacgccctattttttgaagtttccggattacaaattccgaaaaaatccgttactcatttttttcacgctttaacaaaagaaaacacc 40650890  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg---aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaa 358  Q
    |||||| |||||||||| | |||| ||||||  ||||||||||   ||||| ||||||||||| | || ||||||| ||| | ||||||||    
T  40650891 attccggattatataattcggaatgctccgaaggtaattttggaaaaaaaaaatagggcgcgcgaggatagacatagggtgggaaaagtaa 40650981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 38885207 - 38885092
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatgg 346  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||  ||||||||||||||| ||||||||||| | |||||||||| ||    
T  38885207 caccctttaacaaaagaaaacaccattccggattatataatccggaatgctccgaaggtaattttggaaaaaaatagggcgcgcgaggaaagacataagg 38885108  T
Q  347 tagaaaaagtaatgct 362  Q
    | | ||||||||||||    
T  38885107 tcggaaaagtaatgct 38885092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 45567996 - 45568132
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    |||||||| |||||||||||||||||||||| || |||||||||| |||||||| ||||||||||       |||||||||||||||||||| | |||||    
T  45567996 atcatgtagcgcgccctattttttgaagtttccgaattacaaaattcggaaaaacccgttactcatttttttcaccctttaacaaaagaaaatatcattc 45568095  T
Q  275 cgaattatataatccagaatactccgagagtaatttt 311  Q
    || ||||||||||||  ||| ||||||| ||||||||    
T  45568096 cggattatataatccgaaatgctccgagggtaatttt 45568132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 49677526 - 49677343
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaaccgttactcannnnnnncaccctttaacaaaagaaaacacca 271  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| ||         |||||||       |||||||||||||||||||||||||    
T  49677526 aaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcg---------ttactcatttttt-caccctttaacaaaagaaaacacca 49677437  T
Q  272 ttccgaattatataatccagaatactccgagagtaattttgg--aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    ||||| |||||||||||| |||| ||||||| |||||||| |  ||||| ||||||||||| | |||| ||||| | |  ||||||||||||||    
T  49677436 ttccggattatataatccggaatgctccgagggtaattttagaaaaaaaaatagggcgcgcgaggaaatacataggatgaaaaaagtaatgctc 49677343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 52744937 - 52745079
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||       ||| |||||||||||||||| | |||||    
T  52744937 atcatgtagcgcgccctattttttgaagttttcagattacaaaattcggaaaaatccgttactca-ttttttcacactttaacaaaagaaaatatcattc 52745035  T
Q  275 cgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
       |||||||||||| |||| ||||||| ||||||||| |||||    
T  52745036 tagattatataatccggaatgctccgagggtaattttgaaaaaa 52745079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 15069958 - 15070085
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaa-aaccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||| || ||||||||||||||||| |||||||||||||||| ||| | ||||||||||       | |||||||||||||||||||| |    
T  15069958 aaacatcatgtaacacgtcctattttttgaagtttccggattacaaaatccgaaaatatccgttactca-tttgttctccctttaacaaaagaaaacatc 15070056  T
Q  271 attccgaattatataatccagaatactcc 299  Q
    ||| || |||||||||| | |||||||||    
T  15070057 atttcggattatataattcggaatactcc 15070085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 44573212 - 44573269
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  44573212 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgaaaaaa 44573269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 40908050 - 40908190
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||| | ||||| |||||||||||||| |||||| |||||| |  ||||| ||||||||||       ||||||||||||||||||||||||    
T  40908050 aaacatcatgtagcacgcccaattttttgaagtttccggattgcaaaattctaaaaaatccgttactcatttttt-caccctttaacaaaagaaaacacc 40908148  T
Q  271 attccgaattatataatccagaatactccgagagtaattttg 312  Q
    ||| || |||||| ||||  ||||  ||||||||||||||||    
T  40908149 atttcggattataaaatctggaatgatccgagagtaattttg 40908190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 23442781 - 23442724
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  23442781 aaacatcatgtaacgcgccctattttttgaagtttccagattataaaatccggaaaaa 23442724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 34162837 - 34162894
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  34162837 aaacatcatctaacacgccctattttttgaagtttccggattacaaaatccggaaaaa 34162894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 49786312 - 49786255
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  49786312 aaacatcatgtaacgcgtcctattttttaaagttttcggattgcaaaatccggaaaaa 49786255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 18583660 - 18583716
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaa 228  Q
    |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  18583660 aaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccggaaaa 18583716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 45046967 - 45047034
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactca 239  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  45046967 aaacatcatgtaatg-gccctcttttttgaagttttcggattacaaaatccggaaaaatccgttactca 45047034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 33611526 - 33611583
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||| |||||    
T  33611526 aaacatcatgtaacgcgccctattttttgaagtttccaaattacaaaatccgaaaaaa 33611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 30829582 - 30829632
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  30829582 aaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaatccg 30829632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 32542439 - 32542388
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||||||||    
T  32542439 aaacatcatgtaacgcaccctattttttgaagattccggattacaaaatccg 32542388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 17000421 - 17000355
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaaccgttactc 238  Q
    ||||||||| ||||| |||||||| ||||| |||| || ||||||||||||||||||||||| ||||    
T  17000421 aaacatcatctaacgtgccctattatttgatgtttccgaattacaaaatccggaaaaaccgtaactc 17000355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 41584786 - 41584932
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||  |||||| |||||||| ||| ||||||||||||||| |||||| |||| |||         |||||| |||||||||||||||||    
T  41584786 aaacatcatgtaacatgccctagtttttgaaatttccggattacaaaatccagaaaaacccgtaact-tcatttttcaccctataacaaaagaaaacacc 41584884  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
    |||||  |||||  |||||  ||| ||| || ||||||||||||||||    
T  41584885 attcctgattatgaaatccgaaatgctctgaaagtaattttggaaaaa 41584932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 18238289 - 18238183
Alignment:
Q  263 aaaacaccattccgaattatataatccagaatactccgagagtaattttg---gaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaat 359  Q
    |||||| ||||||| |||||||||||  |||| ||||||| |||||||||    ||||| |||| |||||||| |||| ||||| ||| |||||| ||||    
T  18238289 aaaacagcattccggattatataatctggaatgctccgagggtaattttgaaaaaaaaaaatagagcgcgcaaggaaaaacatagggttgaaaaaataat 18238190  T
Q  360 gctctaa 366  Q
    |||||||    
T  18238189 gctctaa 18238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 43319316 - 43319433
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    ||||||||||||||| |||||||| |  ||| |||||||||||||||||||||| |||| |||||       |||||||||||||| ||||||||  |||    
T  43319316 atcatgtaacgcgccatatttttttagatttccggattacaaaatccggaaaaatccgtaactca-ttttttcaccctttaacaaaggaaaacactgttc 43319414  T
Q  275 cgaattatataatccagaa 293  Q
    |  |||||| |||||||||    
T  43319415 cagattataaaatccagaa 43319433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 24471431 - 24471481
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  24471431 aaacatcatgtaacgcgcccta-tttttgaagtttctggattacaaaatccg 24471481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 34006298 - 34006246
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaa 228  Q
    |||||||| | |||||||||||||||| ||| ||||||| |||||||||||||    
T  34006298 atcatgtagcccgccctattttttgaattttccggattaaaaaatccggaaaa 34006246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 26723614 - 26723649
Alignment:
Q  187 cgccctattttttgaagttttcggattacaaaatcc 222  Q
    |||||||||||||||||||| |||||||||||||||    
T  26723614 cgccctattttttgaagtttccggattacaaaatcc 26723649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 33805520 - 33805603
Alignment:
Q  275 cgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaa 358  Q
    ||||||| |||||||| ||| |||||||  |||||||||||||| ||||| ||| | | |||||||||| | ||| ||||||||    
T  33805520 cgaattacataatccaaaatgctccgaggataattttggaaaaaaataggacgcacgaggaaagacataggataggaaaagtaa 33805603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 9446183 - 9446221
Alignment:
Q  185 cgcgccctattttttgaagttttcggattacaaaatccg 223  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  9446183 cgcgccctattttttgagattttcggattacaaaatccg 9446221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 17000476 - 17000446
Alignment:
Q  135 aactgttttaccttgaaaaatggtgtttagg 165  Q
    |||||||||||||||||||||||||||||||    
T  17000476 aactgttttaccttgaaaaatggtgtttagg 17000446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 800932 - 800969
Alignment:
Q  186 gcgccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  800932 gcgccctattttttgagattttcggattacaaaatccg 800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 24472950 - 24472995
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatc 221  Q
    |||| ||| ||| |||||||||||||||||||||||||| ||||||    
T  24472950 atcaagtagcgcaccctattttttgaagttttcggattataaaatc 24472995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 28866751 - 28866803
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||| |||||||||||||||  ||||  ||||||||||||||||||||||    
T  28866751 atcatgtagcgcgccctattttttatagttc-cggattacaaaatccggaaaaa 28866803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 40650735 - 40650764
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgttta 163  Q
    ||||||||||||||||||||||||||||||    
T  40650735 gaactgttttaccttgaaaaatggtgttta 40650764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 890536 - 890500
Alignment:
Q  187 cgccctattttttgaagttttcggattacaaaatccg 223  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  890536 cgccctattttttgaggttttcggattataaaatccg 890500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 45047044 - 45047132
Alignment:
Q  278 attatataatccagaatactccgagagtaattttggaaaaaga-tagggcgcgcaatgaaagacatatggtagaaaaagtaatgctcta 365  Q
    |||||||||||  |||| |||||||  |||||||| ||||| | |||| ||||| | |||||||||| ||| | |||||||||||||||    
T  45047044 attatataatctggaatgctccgaggataattttgaaaaaaaaataggacgcgcgaggaaagacatagggtgggaaaagtaatgctcta 45047132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 172 - 363
Target Start/End: Original strand, 34821512 - 34821703
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||       ||||||||||||||||||||||||    
T  34821512 aaacatcaggtaacgcgccctattttttgaagtttccggattacaaaatccggaaaattccgttactcatttttt-caccctttaacaaaagaaaacacc 34821610  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||| |||||||||||  ||||||| |||| ||||||||| ||||| || | |||||| | |||  ||||| ||| |||||||||||||||    
T  34821611 attccggattatataatctggaatactacgagggtaattttgaaaaaaaattgagcgcgcgaggaattacatagggtggaaaaagtaatgctc 34821703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 51540730 - 51540921
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnn-caccctttaacaaaagaaaacac 269  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||        |||||||||||||||||||||||    
T  51540730 aaacatcatgtaacgcgccctattttttgaagtttccggattccaaaatccagaaaaatccgttactcattttttttcaccctttaacaaaagaaaacac 51540829  T
Q  270 cattccgaattatataatccagaatactccgagagtaattttgg-aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgct 362  Q
    |||| || |||||| ||||  |||| ||||||| |||||||||| ||||| ||||||||||  | |||||||||| ||| | ||||||||||||    
T  51540830 catttcggattataaaatctggaatgctccgagggtaattttggaaaaaaaatagggcgcg--aggaaagacatagggtgggaaaagtaatgct 51540921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 172 - 318
Target Start/End: Complemental strand, 35142117 - 35141974
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||||         ||||||||||||||||| ||||||    
T  35142117 aaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaacccggaaaaatccgttact----tttttcaccctttaacaaaagataacacc 35142022  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
    |||||| |||||||||||| |||| ||||||| |||||||||||||||    
T  35142021 attccggattatataatccggaatgctccgagggtaattttggaaaaa 35141974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 38977864 - 38978058
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||| |       ||||||||||||||| ||||||||    
T  38977864 aaacaccatgtaacgcgccctattttttgaagtttccggattacaaaatctagaaaaatccgttacttatttttt-caccctttaacaaaataaaacacc 38977962  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg----aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgct 362  Q
    |||||  |||||||||||| |||| |||| || ||||||| ||    ||||| ||||||||||| | ||||| |||| ||| ||||||||||||||    
T  38977963 attccagattatataatccggaatgctccaagggtaatttgggaagaaaaaaaatagggcgcgcgaggaaaggcatagggtggaaaaagtaatgct 38978058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 363
Target Start/End: Original strand, 3902922 - 3903118
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||        |||||| ||||||| |||||||||    
T  3902922 aaacatcatgtaacgcgctctattttttgaagttttcggattacaaaatccggaaaaaccagtaactc-cacttttcaccctataacaaaggaaaacacc 3903020  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg-----aaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||| |||||  ||||| ||||  | |||| ||||||||||     ||||| ||||||||| | | ||||| |||| ||| |||||||||||||||    
T  3903021 attccggattatgaaatccggaatgattcgagggtaattttggaagaaaaaaaaatagggcgcacgaggaaaggcatagggtggaaaaagtaatgctc 3903118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 364
Target Start/End: Complemental strand, 47123135 - 47122957
Alignment:
Q  186 gcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacaccattccgaattatat 284  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||       |||||||||||||||||||||| ||||||  |||||||    
T  47123135 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcatttttt-caccctttaacaaaagaaaacatcattccagattatat 47123037  T
Q  285 aatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
    ||||  |||| ||||||| |||||||| |||||  |||| |||||| | |||||  ||| ||| | |||||| |||||||    
T  47123036 aatctggaatgctccgagggtaattttcgaaaagaatagagcgcgctaggaaaggaataaggtgggaaaagtgatgctct 47122957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 364
Target Start/End: Complemental strand, 47130501 - 47130323
Alignment:
Q  186 gcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacaccattccgaattatat 284  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||       |||||||||||||||||||||| ||||||  |||||||    
T  47130501 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcatttttt-caccctttaacaaaagaaaacatcattccagattatat 47130403  T
Q  285 aatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctct 364  Q
    ||||  |||| ||||||| |||||||| |||||  |||| |||||| | |||||  ||| ||| | |||||| |||||||    
T  47130402 aatctggaatgctccgagggtaattttcgaaaagaatagagcgcgctaggaaaggaataaggtgggaaaagtgatgctct 47130323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 47740048 - 47740165
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| ||||       |||||||||||||||||||||| |    
T  47740048 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatctgttgctca-ttttttcaccctttaacaaaagaaaacatc 47740146  T
Q  271 attccgaattatataatcc 289  Q
    |||||| ||||||||||||    
T  47740147 attccggattatataatcc 47740165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 501257 - 501315
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaac 230  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  501257 aaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccggaaaaac 501315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 50716295 - 50716236
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  50716295 aaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50716236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 50796552 - 50796611
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  50796552 aaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50796611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 3937431 - 3937373
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaac 230  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3937431 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaattcggaaaaac 3937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 47302062 - 47301952
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || | ||||        |||||| ||||||| |||||||||    
T  47302062 aaacatcatgtaacgcgccttatttttttaagtttccggattacaaaatccggaaaaatccataactc-catttttcaccctataacaaaggaaaacacc 47301964  T
Q  271 attccgaattat 282  Q
    ||||||||||||    
T  47301963 attccgaattat 47301952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 33438564 - 33438499
Alignment:
Q  173 aacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttact 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||    
T  33438564 aacatcatgtaacgcgccctattttttgaagtttttggattacaaaattcagaaaaatccgttact 33438499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 51258438 - 51258325
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattccga 277  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||| |||| |||||       |||||||||||||| |||||||| ||||||     
T  51258438 atgtaacgcgccctattttttgaaatttatggattacaaaatccggaaaaatccgtaactca--tttttcaccctttaacaaaggaaaacacaattccgg 51258341  T
Q  278 attatataatccagaa 293  Q
    |||||  |||||||||    
T  51258340 attatgaaatccagaa 51258325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 363
Target Start/End: Complemental strand, 4394202 - 4394087
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatgg 346  Q
    |||||||||||||||||||||| ||||||  |||||||||||  |||| |||||||  |||||||| ||||| ||| |||| || | ||||| |||| ||    
T  4394202 caccctttaacaaaagaaaacatcattccagattatataatctggaatgctccgaggataattttgaaaaaaaataaggcgtgcga-gaaaggcataggg 4394104  T
Q  347 tagaaaaagtaatgctc 363  Q
    | |||||||||||||||    
T  4394103 tggaaaaagtaatgctc 4394087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 34821459 - 34821514
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaa 227  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  34821459 aaacatcatgtaacgcgctctattttttgaagtttccggattacaaaattcggaaa 34821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 39149845 - 39149731
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattccga 277  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||||||| ||||| || |       ||||||||||||||||||||||| ||||       
T  39149845 atgtaacgcgccctattttttg-agtttctggattacaaaatccggaaaaatccgttgct-aattttttcaccctttaacaaaagaaaacacaattctag 39149748  T
Q  278 attatataatccagaat 294  Q
    |||||||||||||||||    
T  39149747 attatataatccagaat 39149731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 42936736 - 42936686
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  42936736 atgtagcgcaccctattttttgaagttttcggattacaaaatccggaaaaa 42936686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 45244428 - 45244375
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  45244428 atcatgtaacgcgccctattttttgagattttcgaattacaaaatccggaaaaa 45244375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 282
Target Start/End: Complemental strand, 48304030 - 48303924
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacaccattc 274  Q
    |||||||||| | |||||||||||||  ||| |||||||||||||||||||||| |||| |||||       |||||||||||||| |||||||||||||    
T  48304030 atcatgtaacacaccctattttttgagatttccggattacaaaatccggaaaaatccgtaactca-ttttttcaccctttaacaaaggaaaacaccattc 48303932  T
Q  275 cgaattat 282  Q
    || |||||    
T  48303931 cggattat 48303924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 2358738 - 2358849
Alignment:
Q  172 aaacatcatgtaacgcgccctatttt-ttgaagttttcggattacaaaatcc-ggaaaaaccgttactcannnnnnncaccctttaacaaaagaaaacac 269  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||| |||| ||||        |||||| ||||||| ||||||||    
T  2358738 aaacatcatgtaacacgccctatttttttgaagtttccggattacaaaatccaggaaaatccgtaactc-catttttcaccctataacaaaggaaaacac 2358836  T
Q  270 cattccgaattat 282  Q
    ||||||| |||||    
T  2358837 cattccggattat 2358849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 28873046 - 28872988
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaac 230  Q
    |||||| |||||||||| ||||||||||||| ||||||||||| ||||||| |||||||    
T  28873046 aaacataatgtaacgcgtcctattttttgaaattttcggattataaaatccagaaaaac 28872988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 3352182 - 3352284
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||| ||||||||||| |||||| | |||||||||||  |||||||  |||||||||       ||||||||||||||| |||||| |    
T  3352182 aaacatcatgtaacgcaccctatttttttaagtttcctgattacaaaatttggaaaaattcgttactcatttttttcaccctttaacaaaaaaaaacatc 3352281  T
Q  271 att 273  Q
    |||    
T  3352282 att 3352284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 30721939 - 30721974
Alignment:
Q  186 gcgccctattttttgaagttttcggattacaaaatc 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  30721939 gcgccctattttttgaagttttcggattacaaaatc 30721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 46622900 - 46622969
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcgg-attacaaaatccggaaaaa-ccgttactca 239  Q
    ||||||||||||||| | ||||||||||||||||| |||  ||| |||||||||||||| ||||||||||    
T  46622900 aaacatcatgtaacgtgtcctattttttgaagtttccggttttataaaatccggaaaaatccgttactca 46622969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 8735139 - 8735104
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattat 282  Q
    |||||||||||||| |||||||||||||||||||||    
T  8735139 caccctttaacaaaggaaaacaccattccgaattat 8735104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 9087380 - 9087345
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattat 282  Q
    |||||||||||||| |||||||||||||||||||||    
T  9087380 caccctttaacaaaggaaaacaccattccgaattat 9087345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 33700810 - 33700775
Alignment:
Q  194 ttttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||||||||||||||| |||||||    
T  33700810 ttttttgaagttttcggattacaaaatctggaaaaa 33700775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 39149908 - 39149877
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||||    
T  39149908 gaactgttttaccttgaaaaatggtgtttagg 39149877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 33700725 - 33700679
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaa 293  Q
    |||||||||||||| ||||||||||||||| |||||  |||||||||    
T  33700725 caccctttaacaaaggaaaacaccattccggattatgaaatccagaa 33700679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 49096347 - 49096400
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||  ||| ||||||||||  ||| ||||||||||||||||||||||    
T  49096347 atcatgtaacatgccatattttttgagatttccggattacaaaatccggaaaaa 49096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 12717179 - 12717227
Alignment:
Q  278 attatataatccagaatactccgagagtaattttggaaaaagatagggc 326  Q
    |||||||||||| || | ||| ||||||||||||||||||| |||||||    
T  12717179 attatataatccggattgctcagagagtaattttggaaaaaaatagggc 12717227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 28830283 - 28830331
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaata 295  Q
    ||||||||||||||| ||||||||||| | ||||||| |||||| ||||    
T  28830283 caccctttaacaaaaaaaaacaccatttcaaattataaaatccaaaata 28830331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 33438620 - 33438592
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgttt 162  Q
    |||||||||||||||||||||||||||||    
T  33438620 gaactgttttaccttgaaaaatggtgttt 33438592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 7412871 - 7412678
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||       |||||||||||||||||||||| |    
T  7412871 aaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactca-ttttttcaccctttaacaaaagaaaacatc 7412773  T
Q  271 attccgaattatataatccagaatactccgagagtaattttg--gaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||  |||||||||||| |||| ||||||| |||||||||   ||||| |||||| |||| | |||||||||| ||| | |||||||||||||    
T  7412772 attccagattatataatccggaatgctccgagggtaattttgaaaaaaaaaatagggtgcgcgaggaaagacatagggtgggaaaagtaatgctc 7412678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 172 - 367
Target Start/End: Original strand, 14587676 - 14587870
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||       |||||||||||||||||||| ||     
T  14587676 aaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaatcccttactca-ttttttcaccctttaacaaaagaaaataca 14587774  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctctaat 367  Q
    |||||  |||||||||||| |||| |||||||  |||| || |||||| ||||||||||| | |||||||||| | |  ||||||||||||||||||    
T  14587775 attccagattatataatccggaatgctccgaggataatattagaaaaaaatagggcgcgcgaggaaagacata-gttgaaaaaagtaatgctctaat 14587870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 17264453 - 17264294
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||       |||||| ||||||||||||||| |    
T  17264453 aaacatcatgtaacgcgccctattttttgaagtttccagattacaaaatccggaaaaatccgttactca-ttttttcaccctgtaacaaaagaaaacatc 17264355  T
Q  271 attccgaattatataatccagaatactccgagagtaattttgg-aaaaagatagggcgcgc 330  Q
    |||| | || |||||||||| ||| ||||||  |||||||||| ||||| |||||||||||    
T  17264354 attcaggatcatataatccaaaatgctccgaaggtaattttggaaaaaaaatagggcgcgc 17264294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 32035156 - 32035099
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32035156 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaa 32035099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 3717399 - 3717501
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaa-accgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||  || |||||||       ||||||||||||||||||||||||    
T  3717399 aaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaattcggaaaagcccattactca-ttttttcaccctttaacaaaagaaaacacc 3717497  T
Q  271 attc 274  Q
    ||||    
T  3717498 attc 3717501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 4508418 - 4508535
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    |||||||||||||| ||||||| |||||||| |||  |||||| |||||||||||||| ||||||||||       |||||| |||||||||||||||||    
T  4508418 aaacatcatgtaacacgccctaatttttgaaatttctggattataaaatccggaaaaatccgttactca-ttttttcaccctctaacaaaagaaaacacc 4508516  T
Q  271 attccgaattatataatcc 289  Q
    |||| | |||||| |||||    
T  4508517 attctggattataaaatcc 4508535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 5699601 - 5699542
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc 231  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| || |||||||    
T  5699601 aaacatcatgtaacgcgccctattttttcaagtttccggattacaaaattcgaaaaaacc 5699542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 1945652 - 1945702
Alignment:
Q  179 atgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  1945652 atgtaacgcaccctagtttttgaagttttcggattacaaaatccggaaaaa 1945702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 23406839 - 23406781
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaac 230  Q
    ||||||||  ||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  23406839 aaacatcaactaacgcgccctattttttgaagtttccggattacgaaattcggaaaaac 23406781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 24604482 - 24604535
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||  ||||||||||||||||||||| |||||||||||| ||||||||    
T  24604482 atcatgtaagacgccctattttttgaagtttttggattacaaaattcggaaaaa 24604535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 33413463 - 33413519
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||    
T  33413463 aaacatcatgtaacgcgcccta-tttttgaagtttccggattacaaaattcagaaaaa 33413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 21517662 - 21517738
Alignment:
Q  247 caccctttaacaaaagaa-----aacaccattccgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
    ||||||||||||||||||     ||||||||| || |||||| |||||||||| ||||||| |||||||||||||||    
T  21517662 caccctttaacaaaagaattaaaaacaccatttcggattataaaatccagaatgctccgagggtaattttggaaaaa 21517738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 9905157 - 9905104
Alignment:
Q  176 atcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa 229  Q
    |||| ||| |||||||||||||||||| ||| || |||||||||||||||||||    
T  9905157 atcacgtagcgcgccctattttttgaaatttccgaattacaaaatccggaaaaa 9905104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 2813340 - 2813388
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaat 220  Q
    |||||||||||||| | || ||||||||||||||| |||||||||||||    
T  2813340 aaacatcatgtaacacaccttattttttgaagtttccggattacaaaat 2813388  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 14587620 - 14587651
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||||    
T  14587620 gaactgttttaccttgaaaaatggtgtttagg 14587651  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 23406895 - 23406864
Alignment:
Q  134 gaactgttttaccttgaaaaatggtgtttagg 165  Q
    ||||||||||||||||||||||||||||||||    
T  23406895 gaactgttttaccttgaaaaatggtgtttagg 23406864  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 2539499 - 2539434
Alignment:
Q  297 tccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaatgctc 363  Q
    |||||| ||||||||| ||||| |||||||| || | |||||||||| ||| |||||||||||||||    
T  2539499 tccgagggtaattttgaaaaaa-atagggcgtgcgaggaaagacatagggtggaaaaagtaatgctc 2539434  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 31721961 - 31721915
Alignment:
Q  313 gaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaat 359  Q
    |||||| ||||||||||||| |||||||||| ||| |||||||||||    
T  31721961 gaaaaaaatagggcgcgcaaggaaagacatagggtggaaaaagtaat 31721915  T

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Target: scaffold0027 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 142079 - 142224
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaacc-gttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||| ||       |||||||||||||||||||||| |    
T  142079 aaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatctgttacacattttt--caccctttaacaaaagaaaacatc 142176  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaaaa 318  Q
    ||||||||||||||||||  |||| ||||||| |||||||||||||||    
T  142177 attccgaattatataatctggaatgctccgagggtaattttggaaaaa 142224  T

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Target: scaffold0137 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 9613 - 9757
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||| ||||        |||||| ||||||| ||||||||     
T  9613 aaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaattcggaaaaacccgtaactc-tatttttcaccctataacaaaggaaaacaca 9711  T
Q  271 attccgaattatataatccagaatactccgagagtaattttggaaa 316  Q
    ||||||||||||  ||||| |||| ||||||| |||||||||||||    
T  9712 attccgaattatgaaatccggaatgctccgagggtaattttggaaa 9757  T

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Target: scaffold0182 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 23165 - 23026
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa-ccgttactcannnnnnncaccctttaacaaaagaaaacacc 270  Q
    ||||||||||||| || |||||||||||||||||| ||||||| ||||| |||||||| ||||||||||       ||||||| ||||||||||||||      
T  23165 aaacatcatgtaatgcaccctattttttgaagtttccggattataaaattcggaaaaatccgttactca--tttttcacccttcaacaaaagaaaacata 23068  T
Q  271 attccgaattatataatccagaatactccgagagtaattttg 312  Q
    ||| || |||||||||||  |||||||||||| |||||||||    
T  23067 attacggattatataatctggaatactccgagggtaattttg 23026  T

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Target: scaffold0210 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 8711 - 8616
Alignment:
Q  263 aaaacaccattccgaattatataatccagaatactccgagagtaattttggaaaaagatagggcgcgcaatgaaagacatatggtagaaaaagtaa 358  Q
    |||||||||||||| |||||||||||| || | ||||||||||||||||||||||| ||||||||||  | |||||||||| ||| | ||||||||    
T  8711 aaaacaccattccggattatataatccggattgctccgagagtaattttggaaaaaaatagggcgcgtgaggaaagacatagggtgggaaaagtaa 8616  T

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Target: scaffold0508 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 3511 - 3624
Alignment:
Q  172 aaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatccggaaaaa---ccgttactcannnnnnncaccctttaacaaaagaaaaca 268  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||| || |||||    |||||||||       ||||||||||||||||||||||    
T  3511 aaacatcatgtaacgcgccctattttttgaagtttctagattacaaaattcgaaaaaaaattcgttactca-ttttttcaccctttaacaaaagaaaaca 3609  T
Q  269 ccattccgaattata 283  Q
    |||||||| ||||||    
T  3610 ccattccggattata 3624  T

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Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 140576 - 140492
Alignment:
Q  247 caccctttaacaaaagaaaacaccattccgaattatataatccagaatactccgagagtaattttgga-aaaagatagggcgcgc 330  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||  ||| ||||| | ||||||||||| |||| |||||||||||    
T  140576 caccttttaacaaaagaaaacatcattccggattatataatccgaaatgctccgggggtaattttggaaaaaaaatagggcgcgc 140492  T

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