View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6983_low_9 (Length: 417)
Name: NF6983_low_9
Description: NF6983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6983_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 37975954 - 37976152
Alignment:
| Q |
36 |
tgcatgtgatgagtggaattggaacctagaatctctaaataaataatataaatgcaaagttttgatctacaatcagtcaatggtttaattttattggtgt |
135 |
Q |
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| T |
37975954 |
tgcatgtgatgagtgtaagtggaacctagaatctctaaataaataatataaatgcaaagttttgatctacaatcagtcaatggtttaattttattggtgt |
37976053 |
T |
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| Q |
136 |
taataatacttg----gtaccaaaatcaaccaatttcaaaatcatatgctagaagtgctcaattttgtgtatagtagagctatttttagtcccttggct |
230 |
Q |
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| T |
37976054 |
taataatacttaattagtaccaaaatcaaccaatttcaaaatcatatgctagaagtgctcaattttgtgtatagtagagctatttttagtcccttggct |
37976152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 256 - 411
Target Start/End: Original strand, 37976199 - 37976354
Alignment:
| Q |
256 |
aaaccatttccaacacttatatagaatacataaatgtcagtatactactgcatgacagaactaaagctattggagtgtctctggcattatggccaaagga |
355 |
Q |
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| T |
37976199 |
aaaccatttccaacacttatatagaatacataaatgtcagtatactactgcatgacagaactaaagctattggagtgtctctggcattatggccaaagga |
37976298 |
T |
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| Q |
356 |
gcattgatgtgaacattgaataatgacatatagcacaaagtgttgagtattattta |
411 |
Q |
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| T |
37976299 |
gcattgatgtgaacattgaataatgacatatagcacaaagtgttgagtatttttta |
37976354 |
T |
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