View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6984_high_2 (Length: 242)
Name: NF6984_high_2
Description: NF6984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6984_high_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 33140954 - 33140727
Alignment:
| Q |
15 |
cactgtcttcaaagctgtagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccatcctgtctcattcttgtatgaaagcaatttc |
114 |
Q |
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| T |
33140954 |
cactgtcttcaaaactgaagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccacccagtctcattcttgtaagaaagcaatttc |
33140855 |
T |
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| Q |
115 |
tcaacctgctgtgtaacagtgtttgttttctcatgcatcttggtcacaaacaaactttctacctttttccaaaagttgttaaccacatttggctgttgag |
214 |
Q |
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| T |
33140854 |
tcaacctgttgtgttacagtgtttgttttctcatgcatcttggtcacaaacaaactttctacctttttccagaagttgttaaccacatttggctgttgag |
33140755 |
T |
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| Q |
215 |
actccaagcaaaacaggacaattgaagt |
242 |
Q |
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||||||||||||||||| |||||||||| |
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| T |
33140754 |
actccaagcaaaacaggtcaattgaagt |
33140727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 33159571 - 33159363
Alignment:
| Q |
18 |
tgtcttcaaagctgtagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccatcctgtctcattcttgtatgaaagcaatttctca |
117 |
Q |
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|||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||| |||||| ||||| ||||||||||||||| |
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| T |
33159571 |
tgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactcatttttgtaagaaagcaatttctca |
33159472 |
T |
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| Q |
118 |
acctgctgtgtaacagtgtttgttttctcatgcatcttggtcacaaacaaactttctacctttttccaaaagttgttaaccacatttggctgttgagact |
217 |
Q |
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| T |
33159471 |
acctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccacattttgttgttgagact |
33159372 |
T |
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| Q |
218 |
ccaagcaaa |
226 |
Q |
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| T |
33159371 |
ccaagcaaa |
33159363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 33182415 - 33182207
Alignment:
| Q |
18 |
tgtcttcaaagctgtagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccatcctgtctcattcttgtatgaaagcaatttctca |
117 |
Q |
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|||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||| |||||| ||||| ||||||||||||||| |
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| T |
33182415 |
tgtcttcaaaactgtagtcccatgaccaacagcaatcacaatagaacctttggttacaattgcccaccctgactcatttttgtaagaaagcaatttctca |
33182316 |
T |
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| Q |
118 |
acctgctgtgtaacagtgtttgttttctcatgcatcttggtcacaaacaaactttctacctttttccaaaagttgttaaccacatttggctgttgagact |
217 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||||| |
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| T |
33182315 |
acctgttgtgtaacagagtttgttttctcatgcatcttggtcacaaacaaactctctacctttttccaaaaggtgttaaccacattttgttgttgagact |
33182216 |
T |
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| Q |
218 |
ccaagcaaa |
226 |
Q |
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| T |
33182215 |
ccaagcaaa |
33182207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 33287166 - 33287366
Alignment:
| Q |
29 |
ctgtagtcccatgaccaacagaagtcacaatagaccctttggttacaattgcccatcctgtctcattcttgtatgaaagcaatttctcaacctgctgtgt |
128 |
Q |
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||||||| ||||| ||||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| | |
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| T |
33287166 |
ctgtagtaccatggccaacagcaatcacaatagaacctttggttacaattgcccaccctgtctcattcttgtacgaaagcaatttctcaacctgttgttt |
33287265 |
T |
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| Q |
129 |
aacagtgtttgtt------ttctcatgcatcttggtcacaaacaaactttctacctttttccaaaagttgttaaccacatttggctgttgagactccaag |
222 |
Q |
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| T |
33287266 |
tacactgtctgttgtatcattattattcatcttggtgagaaacaaactctccacctttgtccaaaatttgttaaccacatttggcttttgagactccaag |
33287365 |
T |
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| Q |
223 |
c |
223 |
Q |
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| T |
33287366 |
c |
33287366 |
T |
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