View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6985_high_3 (Length: 382)
Name: NF6985_high_3
Description: NF6985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6985_high_3 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 3 - 373
Target Start/End: Original strand, 27055 - 27425
Alignment:
| Q |
3 |
ttccagccatggcaatcaacagagttattacagatgggttcggatggtggttcccaactaactacaagttgttcagagcacgtatcgtcactgatcatgt |
102 |
Q |
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| T |
27055 |
ttccagccatggcaatcaacagagttattacagatgggttcggaaggtggttcccaactaacttcaagttgttcagagcacgtattgtcactggtcatgc |
27154 |
T |
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| Q |
103 |
gaaacggtaaagaaacgttcagacttcctgtccgtttagatccttcatcacaactagtaaaggaataatcctgattttgaagggtaaactttcttctact |
202 |
Q |
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| T |
27155 |
gaaacggtaaagaaacgttcagacttcctgtccgtttagatccttcatcacaactagtaaaggaataatcctcattatgaagggtaagctttcttctact |
27254 |
T |
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| Q |
203 |
ttgatcaacacgaataactctgtaactaacgttgttggcggccttgaagctaaggtgaccttggcccgttgtggtattgcatctaaagttgaagtatgcg |
302 |
Q |
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| T |
27255 |
ttgatcaacacgaataactctgtaactaacgttgttagcggccgtgaagctaaggtgaccttggcctgttgtggtattgcatctaaagttgaagtatgcg |
27354 |
T |
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| Q |
303 |
aggtctccacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaggttct |
373 |
Q |
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| T |
27355 |
aggtctccacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaagttct |
27425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 373
Target Start/End: Original strand, 2111 - 2268
Alignment:
| Q |
210 |
acacgaataactctgtaactaacgttgttggcggccttgaagctaaggtgaccttggcccgttgtggtattgcatctaaagttgaagtatgcgaggtctc |
309 |
Q |
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| T |
2111 |
acactaataactttgtaactaacgttgttgttggcggtgaagctaagtttacc------cgttgagatgttgcatctaaagttgaagtatgtgaagtctg |
2204 |
T |
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| Q |
310 |
cacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaggttct |
373 |
Q |
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| T |
2205 |
cacagatgggtctggtattgagaggataagggactgtgtttgtaccacaaggctcacaagttct |
2268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1899 - 1980
Alignment:
| Q |
1 |
gtttccagccatggcaatcaacagagttattacagatgggttcggatggtggttcccaactaactacaagttgttcagagca |
82 |
Q |
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| T |
1899 |
gtttccaaccatagaaatcaacaaagttatcacaaacgagttcggaaggtggatcccaactaacttccacttgttcagagca |
1980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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