View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6985_low_1 (Length: 1139)
Name: NF6985_low_1
Description: NF6985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6985_low_1 |
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| [»] scaffold0148 (2 HSPs) |
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| [»] scaffold0280 (3 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 3 - 666
Target Start/End: Original strand, 27055 - 27710
Alignment:
| Q |
3 |
ttccagccatggcaatcaacagagttattacagatgggttcggatggtggttcccaactaactacaagttgttcagagcacgtatcgtcactgatcatgt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
27055 |
ttccagccatggcaatcaacagagttattacagatgggttcggaaggtggttcccaactaacttcaagttgttcagagcacgtattgtcactggtcatgc |
27154 |
T |
|
| Q |
103 |
gaaacggtaaagaaacgttcagacttcctgtccgtttagatccttcatcacaactagtaaaggaataatcctgattttgaagggtaaactttcttctact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
27155 |
gaaacggtaaagaaacgttcagacttcctgtccgtttagatccttcatcacaactagtaaaggaataatcctcattatgaagggtaagctttcttctact |
27254 |
T |
|
| Q |
203 |
ttgatcaacacgaataactctgtaactaacgttgttggcggccttgaagctaaggtgaccttggcccgttgtggtattgcatctaaagttgaagtatgcg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27255 |
ttgatcaacacgaataactctgtaactaacgttgttagcggccgtgaagctaaggtgaccttggcctgttgtggtattgcatctaaagttgaagtatgcg |
27354 |
T |
|
| Q |
303 |
aggtctccacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaagttcttggagttggttctacaaaaatgaataaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27355 |
aggtctccacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaagttcttggagttggttctacaaaaatgaataaaa |
27454 |
T |
|
| Q |
403 |
ggaatcttcagaatcatgaatttatttctaattttatatnnnnnnnnnnnnnnngaagaagagagaaatatgtctctaatttaatcatcatatgcatacc |
502 |
Q |
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||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27455 |
ggaattttcagaatcatgaatttgtttctaattttatat--------aaaaaaagaagaagagagaaatatgtctctaatttaatcatcatatgcatacc |
27546 |
T |
|
| Q |
503 |
tatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtagttaaactttgtgtccagatccaacag |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27547 |
tatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtagttaaactgtgtgtccagatccaacag |
27646 |
T |
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| Q |
603 |
tttgaaggaataagaccacgctgctgcttatcagggacctgaccatatgagtaagcctggcact |
666 |
Q |
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| T |
27647 |
tttgaaggaataagaccacgctgctgcttatcagggacttgagcatatgagtaagcctggcact |
27710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 721 - 1124
Target Start/End: Original strand, 27771 - 28188
Alignment:
| Q |
721 |
cctttttatccggccttcctgttttaatcatggttaaattcaagaaagccgtgccattttcagtacagaatgttgtttttctcctcgtacaatgtagtga |
820 |
Q |
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| T |
27771 |
cctttatatctggccttcctgttttaatcatggtcaagttcaagaacttcgtgtcattttcagtacagaatgttgtttttctcctcgtacaatgtcgtga |
27870 |
T |
|
| Q |
821 |
agaatcttcctctccgtggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatat |
920 |
Q |
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| T |
27871 |
agaatcttcctctccctggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatat |
27970 |
T |
|
| Q |
921 |
gttaaacatttgcttcttggctgcttccatataactggcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttat |
1020 |
Q |
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| T |
27971 |
gttaaacatttgcttcttggctgcttccatataactagcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttat |
28070 |
T |
|
| Q |
1021 |
actgtttgttacgaattactgacctgttccgtttttcaggtgaactgaatttgtt--------------caagaaaactgaagttggtcaacaaattata |
1106 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28071 |
actgttcgttacgaattactgatctgttccgtttttcaggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattata |
28170 |
T |
|
| Q |
1107 |
aacctcaaagctgatgtc |
1124 |
Q |
| |
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|||||||||||||||||| |
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| T |
28171 |
aacctcaaagctgatgtc |
28188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 2e-49; HSPs: 3)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 477 - 609
Target Start/End: Original strand, 2485 - 2617
Alignment:
| Q |
477 |
tctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtag |
576 |
Q |
| |
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|||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
2485 |
tctaatttaatcatcacatgcatacctacctctgatttatcaactaggacaatgagtctacgatcataatcccaattagtatactcttctttaagagtag |
2584 |
T |
|
| Q |
577 |
ttaaactttgtgtccagatccaacagtttgaag |
609 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
2585 |
ttaaactttgtgtccagatccaacaatttgaag |
2617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 210 - 412
Target Start/End: Original strand, 2111 - 2307
Alignment:
| Q |
210 |
acacgaataactctgtaactaacgttgttggcggccttgaagctaaggtgaccttggcccgttgtggtattgcatctaaagttgaagtatgcgaggtctc |
309 |
Q |
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|||| ||||||| ||||||||||||||||| ||| |||||||||| | ||| ||||| | | |||||||||||||||||||||| || |||| |
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| T |
2111 |
acactaataactttgtaactaacgttgttgttggcggtgaagctaagtttacc------cgttgagatgttgcatctaaagttgaagtatgtgaagtctg |
2204 |
T |
|
| Q |
310 |
cacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaagttcttggagttggttctacaaaaatgaataaaaggaatct |
409 |
Q |
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| T |
2205 |
cacagatgggtctggtattgagaggataagggactgtgtttgtaccacaaggctcacaagttcttggagttggtgctgcaaatatcaataaaaggaatct |
2304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1899 - 1980
Alignment:
| Q |
1 |
gtttccagccatggcaatcaacagagttattacagatgggttcggatggtggttcccaactaactacaagttgttcagagca |
82 |
Q |
| |
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||||||| |||| | |||||||| |||||| ||| | | ||||||| ||||| |||||||||||| | | |||||||||||| |
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| T |
1899 |
gtttccaaccatagaaatcaacaaagttatcacaaacgagttcggaaggtggatcccaactaacttccacttgttcagagca |
1980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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