View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6985_low_3 (Length: 386)
Name: NF6985_low_3
Description: NF6985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6985_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 40788274 - 40788093
Alignment:
| Q |
7 |
acatcatcaataacaacaacaataagaagaacgagaataataaaaagaatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaagg |
106 |
Q |
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| T |
40788274 |
acatcatcaataacaacaacaataagaagaacgagaataataaaaataatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaagg |
40788175 |
T |
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| Q |
107 |
ttgttcttccaaaatcgtcaaattcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
188 |
Q |
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| T |
40788174 |
ttgttcttccaaaatcgtcaaattcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
40788093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 249 - 371
Target Start/End: Complemental strand, 40788033 - 40787911
Alignment:
| Q |
249 |
aactgaagcattgaaccttcttattgaaggcttcgaaaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
348 |
Q |
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| T |
40788033 |
aactgaagcattgaaccttcttattgaaggcttcgagaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
40787934 |
T |
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| Q |
349 |
agagataaccttgctattaaaac |
371 |
Q |
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| T |
40787933 |
agagataaccttactattaaaac |
40787911 |
T |
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