View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6985_low_6 (Length: 306)
Name: NF6985_low_6
Description: NF6985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6985_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 4538405 - 4538128
Alignment:
| Q |
15 |
ctgtggaatggtttattgactcactataaggtagtttgtgtgttctaaattttttctgctgccggtactgatttcttaaaatataggtatattgtcctct |
114 |
Q |
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| T |
4538405 |
ctgtggaatggtttattgactcactataaggtagtttgtgtgttctaaattttttctgctgccggtactgatttcttaaaatataggtatattgtcctct |
4538306 |
T |
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| Q |
115 |
ctccaggggcccaaagtttatttggaatgattgtacaatcttcagaaattgaatgnnnnnnngtatgcacccgtatttggggatcagtcgaatgtccccc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4538305 |
ctccaggggcccaaagtttatttggaatgattgtacaatcttcagaaattgaatgtttttttgtatgcacccgtatttggggatcagtcgaatgtccccc |
4538206 |
T |
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| Q |
215 |
aaaggctatctaatgaagtaacaaaaaattgttttcttcaattgcttagaataagccaatccataaaacatcaagcac |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4538205 |
aaaggctatctaatgaagtaacaaaaaattgttttcttcaattgcttagaataagccaatccataaaacttcaagcac |
4538128 |
T |
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