View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6985_low_7 (Length: 299)
Name: NF6985_low_7
Description: NF6985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6985_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 39687756 - 39688031
Alignment:
| Q |
14 |
cctgtgcgcaggtgtgtatttcaaagttctatttcgtgaatttgagatgtaatgcattttcacaacgaatgcattttattaatctcacacatttactcta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39687756 |
cctgtgcgcaggtgtgtatttcaaagttctatttcgtgaatttgagatgtaatgcattttcacaacgaatgcattttattaatctcacacatttactcta |
39687855 |
T |
|
| Q |
114 |
gtttcggggtggcgacagtccctattacaatattgatttgaaggagatacatgttgcggggaagcggctgcctctaaatccaagtgtttttgatggaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39687856 |
gtttcggggtggcgacagtccctattacaatattgatttgaaggagatacatgttgcggggaagcggctgcctctaaatccaagtgtttttgatggaaaa |
39687955 |
T |
|
| Q |
214 |
catggatcggtcttggacagtggtacaacttatgcatacctaccggaagaagcatttcttgcatttaaagaagctg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39687956 |
catggatcggtcttggacagtggtacaacttatgcatacctaccggaagaagcatttcttgcatttaaagaagctg |
39688031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 81 - 282
Target Start/End: Complemental strand, 5798732 - 5798533
Alignment:
| Q |
81 |
aatgcattttattaatctcacacatttactctagtttcggggtggcgacagtccctattacaatattgatttgaaggagatacatgttgcggggaagcgg |
180 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5798732 |
aatgcatttgattaatctcaca--tttactctagtttcgggatggcaacagtccatattacaatatcaatttgaaggagatgcatgttgcggggaagaaa |
5798635 |
T |
|
| Q |
181 |
ctgcctctaaatccaagtgtttttgatggaaaacatggatcggtcttggacagtggtacaacttatgcatacctaccggaagaagcatttcttgcattta |
280 |
Q |
| |
|
|||| ||||| |||| ||||||||||| || |||||| | |||||||| || || || ||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
5798634 |
ctgcagctaaacccaaaggtttttgatgggaagcatggaactgtcttggatagcggcaccacttatgcatacctaccagaaactgcatttcttgctttta |
5798535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University