View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6986_high_1 (Length: 434)
Name: NF6986_high_1
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 4264186 - 4263760
Alignment:
| Q |
1 |
agattttccttcatggaagaagcttccacagtctactcttccattagtagctgatttcattataaaaaatggggttatatacacaagtgacgagtctctc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4264186 |
agattttcctttatggaagaagcttccacagtctactcttccattagtatctgatttcattataaaaaatggggttatatacacaagtgatgagtctctc |
4264087 |
T |
|
| Q |
101 |
ccatttgcaaactccatggcagttgctaatggaagggttattcgtattggaaacttctcttttgtccaggttcatttcatttc-----tctgtttcttct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4264086 |
ccatttgcaaactccatggcagttgctaatggaagggttattcgtattggaaacttctcttttgtccaggttcatttcatttcatttctctgtttcttct |
4263987 |
T |
|
| Q |
196 |
atattaatattgcnnnnnnnnnaatatatatgatttcaatgtgattttgaggttcaatttccacttacccggaagttatttttcaattgattgattattg |
295 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4263986 |
atattaatattgcttatttttgaatatatatgatttcaatgtgattttgaggttcaatttccacttacccggaagttatttttcaattgattgattattg |
4263887 |
T |
|
| Q |
296 |
agttagttgttactacctttggtaggaattagttagtagttgactatgatgcacagacactcctagaatcctcatattaggcgtgtcctgttgtcaggca |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4263886 |
agttagttgttactacctttggtaggaattagttagtagttgactatgatgcacggacactcctagaatcctcagattaggcgtgtcctgttgtcaggca |
4263787 |
T |
|
| Q |
396 |
cgttatgattccattgaattatgtgat |
422 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4263786 |
cgttatgattccattgaattatgtgat |
4263760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University