View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_high_11 (Length: 359)
Name: NF6986_high_11
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 35724183 - 35723835
Alignment:
| Q |
7 |
cttagtggcccttgattccctacaggatccctcttggccatgcaccttaccttggccatgcaccttctagttatacacttgtgcaataacttattttgtc |
106 |
Q |
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| T |
35724183 |
cttagtggcccttgattccctacaggatccctcttggccatgcaccttaccttggccatgcaccttctagttatatacttgtgcaataacttattttgtc |
35724084 |
T |
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| Q |
107 |
agattacacaatttataaccaagaaatgatcaatttttctctcaattcctgattcttaatcaacaagcgggttatcagaagcggcacaaattccttttgg |
206 |
Q |
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| T |
35724083 |
agattacacaatttataaccaagaaatgatcaatttttctctcaattcctgattcttaatcaacaagcgggttatcagaagcggcacaaaatccttttgg |
35723984 |
T |
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| Q |
207 |
gaatacttg-ttttaaaattttaagacaaaatataattaacataaccttattaatcaagtagtataataaaagtattgccaaaagtaagatgctatacat |
305 |
Q |
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| T |
35723983 |
gaatacttgtttttaaaattttaagacaaaatataattaacataaccttattaatcaagtagtataataaaagtattgccaaaagtaagatgctatacat |
35723884 |
T |
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| Q |
306 |
acagatatagaatgaaagccatattccaaataggtcttcactcatgatc |
354 |
Q |
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| T |
35723883 |
acagatatagaatgaaagccatattcaaaataggtcttcactcatgatc |
35723835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 35685077 - 35685164
Alignment:
| Q |
103 |
tgtcagattacacaatttataaccaagaaatgatcaatttttctctcaattcctgattcttaatcaacaagcgggttatcagaagcgg |
190 |
Q |
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| T |
35685077 |
tgtcatattacacaatttaaaactaagaaattatcaatatttttctcatttcatgattctaattcaacaagtgggttaccagaagcgg |
35685164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 35685222 - 35685277
Alignment:
| Q |
234 |
aaatataattaacataaccttattaatcaagtagtataataaaagtattgccaaaa |
289 |
Q |
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||||| |||||| ||||||||||||||||| | ||| |||||||||||||||||| |
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| T |
35685222 |
aaatagaattaaagtaaccttattaatcaaggattatgataaaagtattgccaaaa |
35685277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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