View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_high_19 (Length: 251)
Name: NF6986_high_19
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30872702 - 30872940
Alignment:
| Q |
1 |
gtaatactttcggccactctcgagaggacgacctgttaagtcgagaacttcttcattttcaggttgtgctgatgttggtatggtcatgaaaaaccataac |
100 |
Q |
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| T |
30872702 |
gtaatactttcggccactctcaagaggacgacctgttaagtcgagaacttcttcattttcaggttgtgctgatgttggtatggtcatgaaaagccataac |
30872801 |
T |
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| Q |
101 |
ataaggctaaggcttgtgattttgatcattcttgttgtcatggttgtgtgtataagtgaattttaaaaggagattttggactatgtttatgttgtagcta |
200 |
Q |
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| T |
30872802 |
ataaggctaaggcttgtgattttgatcattcttgttgtcatggttgtgtgtataagtgaattttaaaaggagattttggactatgtttatgttgtagcta |
30872901 |
T |
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| Q |
201 |
tgtatggcttagtatttatagtgtatgatattgtatatt |
239 |
Q |
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| T |
30872902 |
tgtatggcttagtatttatagtgtatgatattgtatatt |
30872940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 30902990 - 30903087
Alignment:
| Q |
52 |
ttcattttcaggttgtgctgatgttggtatggtcatgaaaaaccataacataaggctaaggcttgtgattttgatcattcttgttgtcatggttgtgt |
149 |
Q |
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| T |
30902990 |
ttcattttcggattgtgccaatgtttttatggacatgaaaagacataacataaggctaaggcttgtaattttgattaatgttgttgacatggttgtgt |
30903087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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