View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6986_high_3 (Length: 626)
Name: NF6986_high_3
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_high_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Complemental strand, 52948478 - 52947969
Alignment:
| Q |
10 |
catcatcacatacacaatcaccttcattcattgtgccttcttcaactacatgaccttcttgacctccaactccccatgaaatgtccaagtccatagaact |
109 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
52948478 |
catcatcacatacaccatcagcttcattcattgtgccttattcaactacatgaccttcttgacctccaactccccctgacatgtccaagtccatagaact |
52948379 |
T |
|
| Q |
110 |
ctgccccaaat---------------------gtgaacctaccatacctatagctaaatgttcaacatataaatgagccacacgtttgttctcaacaaca |
188 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
52948378 |
ctgccccacatccatagaactctaccccacatgtgaacctaccatccctataactgaatgttcaacatataaatgagccacacgtttgttctcaataaca |
52948279 |
T |
|
| Q |
189 |
tagtcaccaacaacatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcat |
288 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
52948278 |
taatcaccaacaatatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccaccataaatgatacttaaggtgatcatcat |
52948179 |
T |
|
| Q |
289 |
aacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaatcccatta--actacgtgttcttgacccccagtgtaatacaaa |
386 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
52948178 |
aacctaactcttttagtataccagtcgcttcgaagtaacaccacctatccctatcaatcccattactactacgtgttcttgacccccagtgtaatacaaa |
52948079 |
T |
|
| Q |
387 |
atgtagtccctaacaaattcacccccttggtgaaatacaactgacacactcatccctgtcaaattttagaaacataaactttgttaataaaccttcatct |
486 |
Q |
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|| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52948078 |
atatagtccgtaacaaattcacccccatggtgaaatacaattgacacactcatccctgtcaaattttagaaacataaactttgttaataaaccttcatct |
52947979 |
T |
|
| Q |
487 |
tcgtctctac |
496 |
Q |
| |
|
|||||||||| |
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|
| T |
52947978 |
tcgtctctac |
52947969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 203 - 346
Target Start/End: Complemental strand, 31810865 - 31810722
Alignment:
| Q |
203 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
302 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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| T |
31810865 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
31810766 |
T |
|
| Q |
303 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
346 |
Q |
| |
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| ||| ||||||||||||||||| |||||| | ||| ||||||| |
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|
| T |
31810765 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
31810722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 52947907 - 52947861
Alignment:
| Q |
558 |
gacatccattctactcttttacatcattacaaactaacattcaaaga |
604 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
52947907 |
gacatccattctactcttttacatcattataaactagcattcaaaga |
52947861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 7797623 - 7797472
Alignment:
| Q |
203 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
302 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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|
| T |
7797623 |
atcagtgtcattgtcatctataatccttaaatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcaaaatatcctaaatctttc |
7797524 |
T |
|
| Q |
303 |
agtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
354 |
Q |
| |
|
| ||| ||||||||||||||||| |||||| | ||| |||||||| |||||| |
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|
| T |
7797523 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
7797472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 203 - 346
Target Start/End: Original strand, 30320348 - 30320491
Alignment:
| Q |
203 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
302 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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|
| T |
30320348 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
30320447 |
T |
|
| Q |
303 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
346 |
Q |
| |
|
| ||| ||||||||||||||||| |||||| | ||| ||||||| |
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|
| T |
30320448 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
30320491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 19393617 - 19393467
Alignment:
| Q |
203 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
302 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| |||| || ||||||| |||| | |||||||||||||||||||| ||||| ||||| |
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|
| T |
19393617 |
atcagtgtcattgtcatctataatccttacataattgtcatcctcaacaatataccaccataacct-tacttaaggtgatcatcatatcctaaatctttc |
19393519 |
T |
|
| Q |
303 |
agtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
354 |
Q |
| |
|
| ||| | ||||||||||||||| |||||| | ||| |||||||| |||||| |
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|
| T |
19393518 |
aatatcctagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
19393467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 346
Target Start/End: Complemental strand, 22055210 - 22055067
Alignment:
| Q |
203 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
302 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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|
| T |
22055210 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
22055111 |
T |
|
| Q |
303 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
346 |
Q |
| |
|
| ||| ||||||||||||||||| || ||| | ||| ||||||| |
|
|
| T |
22055110 |
aatatcccagtagcttcaaagtagcaacacttgtccttatcaat |
22055067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 336
Target Start/End: Original strand, 28430160 - 28430291
Alignment:
| Q |
205 |
cagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactcttttag |
304 |
Q |
| |
|
|||||||||| ||||||| |||||| || || || || ||| ||| ||||||| |||| ||||||||||| ||||||||||| || |||| |||| |
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|
| T |
28430160 |
cagtgtcattgtcatcaataatcctaacatacttgtcctcctcattaatataccaccataatcgatacttaagatgatcatcatatccaaactgctttaa |
28430259 |
T |
|
| Q |
305 |
tataccagtagcttcaaagtaacaccacctat |
336 |
Q |
| |
|
|||||||| |||||||| || | |||||||| |
|
|
| T |
28430260 |
aataccagtggcttcaaaatagctccacctat |
28430291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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