View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6986_high_6 (Length: 550)

Name: NF6986_high_6
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6986_high_6
NF6986_high_6
[»] chr6 (12 HSPs)
chr6 (1-131)||(24126637-24126766)
chr6 (82-131)||(24125972-24126021)
chr6 (78-133)||(7193336-7193391)
chr6 (78-131)||(3543058-3543111)
chr6 (17-70)||(4311122-4311175)
chr6 (78-131)||(33018167-33018220)
chr6 (78-131)||(33480623-33480676)
chr6 (78-126)||(3542819-3542867)
chr6 (78-126)||(22582474-22582522)
chr6 (78-126)||(22587305-22587353)
chr6 (84-132)||(29998176-29998224)
chr6 (78-126)||(33479701-33479749)
[»] chr4 (12 HSPs)
chr4 (1-131)||(47376852-47376981)
chr4 (78-131)||(38694702-38694755)
chr4 (78-133)||(9939366-9939421)
chr4 (82-132)||(47377597-47377647)
chr4 (78-133)||(26611278-26611333)
chr4 (78-132)||(11417686-11417740)
chr4 (78-132)||(21166370-21166424)
chr4 (78-132)||(29651327-29651381)
chr4 (78-131)||(11417932-11417985)
chr4 (78-131)||(36865712-36865765)
chr4 (82-131)||(45235959-45236008)
chr4 (82-131)||(45330565-45330614)
[»] chr5 (6 HSPs)
chr5 (313-465)||(8043594-8043749)
chr5 (78-126)||(33001937-33001985)
chr5 (17-101)||(33685775-33685859)
chr5 (78-132)||(8204119-8204173)
chr5 (78-132)||(33002811-33002865)
chr5 (78-131)||(15184012-15184065)
[»] chr1 (7 HSPs)
chr1 (2-109)||(41882190-41882297)
chr1 (16-117)||(41884162-41884263)
chr1 (51-132)||(51974436-51974517)
chr1 (78-133)||(43737973-43738028)
chr1 (78-132)||(48972440-48972494)
chr1 (78-131)||(16270207-16270260)
chr1 (78-131)||(23440860-23440913)
[»] chr8 (7 HSPs)
chr8 (3-102)||(42915731-42915829)
chr8 (51-133)||(41859308-41859390)
chr8 (84-131)||(43924490-43924537)
chr8 (78-136)||(5034893-5034951)
chr8 (85-131)||(12349967-12350013)
chr8 (78-132)||(34992259-34992313)
chr8 (78-131)||(38023624-38023677)
[»] chr2 (10 HSPs)
chr2 (16-113)||(4058949-4059046)
chr2 (78-132)||(37547997-37548051)
chr2 (79-125)||(44154978-44155024)
chr2 (51-132)||(21471016-21471097)
chr2 (82-135)||(30545434-30545487)
chr2 (82-131)||(37546563-37546612)
chr2 (84-132)||(41043329-41043377)
chr2 (78-131)||(14573261-14573314)
chr2 (78-131)||(21471949-21472002)
chr2 (79-131)||(30544727-30544779)
[»] chr7 (13 HSPs)
chr7 (15-117)||(26246310-26246412)
chr7 (51-131)||(668179-668259)
chr7 (78-133)||(37468908-37468963)
chr7 (78-132)||(38071897-38071951)
chr7 (78-132)||(38778853-38778907)
chr7 (73-131)||(46759252-46759310)
chr7 (78-131)||(17145622-17145675)
chr7 (82-131)||(27599211-27599260)
chr7 (82-131)||(27600094-27600143)
chr7 (78-131)||(37469000-37469053)
chr7 (78-131)||(38779558-38779611)
chr7 (78-126)||(7677804-7677852)
chr7 (83-131)||(46756270-46756318)
[»] scaffold0041 (2 HSPs)
scaffold0041 (78-131)||(27221-27274)
scaffold0041 (78-131)||(27570-27623)
[»] chr3 (5 HSPs)
chr3 (78-126)||(32490190-32490238)
chr3 (78-132)||(36750432-36750486)
chr3 (84-134)||(38337478-38337528)
chr3 (78-126)||(36750050-36750098)
chr3 (79-131)||(38923661-38923713)
[»] scaffold0129 (1 HSPs)
scaffold0129 (83-117)||(43218-43252)
[»] scaffold0311 (1 HSPs)
scaffold0311 (79-132)||(156-209)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 24126637 - 24126766
Alignment:
Q  1 taggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  24126637 taggagagagtctgaaaa-atatctagtgttaagagtccataataataccatgttcttcatttaatccaaaagttaagatcaactttcccatgatgggaa 24126735  T
Q  101 acaactccccttttccaaattaaatgccacc 131  Q
    ||||||||||||| |||||||||||||||||    
T  24126736 acaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 24126021 - 24125972
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  24126021 aactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 7193391 - 7193336
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 133  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  7193391 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 7193336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 3543058 - 3543111
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  3543058 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 4311122 - 4311175
Alignment:
Q  17 aaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaa 70  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||| || ||||||    
T  4311122 aaaatatctaatgttaagagtccatgatagtaccgtgttcttcatttgatccaa 4311175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 33018220 - 33018167
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| | ||||||||||| ||||| ||||| |||||||||||| ||||    
T  33018220 gatcaactttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 33480623 - 33480676
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  33480623 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 3542867 - 3542819
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  3542867 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 22582474 - 22582522
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  22582474 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 22587305 - 22587353
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  22587305 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 29998176 - 29998224
Alignment:
Q  84 cttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||| ||||||||| ||| ||||  ||||||||||||||||||||||||    
T  29998176 ctttcccatgatggaaaaaaactaaccttttccaaattaaatgccacct 29998224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 33479749 - 33479701
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  33479749 gatcaactttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 47376981 - 47376852
Alignment:
Q  1 taggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaa 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  47376981 taggagagagtctgaaaaa-tatctagtgttaagagtccataataataccatgttcttcatttaatccaaaagttaagatcaactttcccatgatgggaa 47376883  T
Q  101 acaactccccttttccaaattaaatgccacc 131  Q
    ||||||||||||| |||||||||||||||||    
T  47376882 acaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 38694755 - 38694702
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||    
T  38694755 gatcaacttttccatgctgggaaagaactctccttttccaaattaaatggcacc 38694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 9939366 - 9939421
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 133  Q
    |||||||||||||||| ||||||| |||||||||||  ||||||||||| ||||||    
T  9939366 gatcaacttttccatggtgggaaagaactcccctttctcaaattaaatggcacctg 9939421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 47377597 - 47377647
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| |||||    
T  47377597 aactttcccatggtgggaaacaactcccctttcccaaattaaatggcacct 47377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 26611278 - 26611333
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 133  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  26611278 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatgacacctg 26611333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 11417740 - 11417686
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  11417740 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 21166370 - 21166424
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||||||||||| ||||| |||||  ||||||||||| |||||    
T  21166370 gatcaactttcccatgatgggaaagaactctcctttctcaaattaaatggcacct 21166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 29651327 - 29651381
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  29651327 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 11417932 - 11417985
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  11417932 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 36865712 - 36865765
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  36865712 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 45235959 - 45236008
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||| ||||| ||||||| ||||| |||||||||||||||||| ||||    
T  45235959 aactttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 45330614 - 45330565
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||||| ||||||||||||||||||| |||  |||||| |||||    
T  45330614 aacttttccatggtgggaaacaactcccctttcccattttaaattccacc 45330565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 313 - 465
Target Start/End: Original strand, 8043594 - 8043749
Alignment:
Q  313 ttatctttctttcattcttgataaagctaatgaaattaaagatgaagaaagagtgtcaaaaatgcatactttagaaactctttatcacgata---gtgtg 409  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||| ||| | |||  ||||    |||   |||||    
T  8043594 ttatcttcctttcattcttgataaagctaaagaaatgaaagatgaagaaagagtgttgaaaatgcatacattaaacactgcttattgttatagcggtgtg 8043693  T
Q  410 agatgggactctagaaatcttgaacaccctacaacatttgaaacacttgctttgga 465  Q
    | |||||| || | |||||||||||| ||| |||||||||||||||||||| ||||    
T  8043694 aaatgggattcaataaatcttgaacatccttcaacatttgaaacacttgctatgga 8043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 33001985 - 33001937
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  33001985 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 33685859 - 33685775
Alignment:
Q  17 aaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaa 101  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||| |||||| ||  | ||  |||||||||| |||| |||||||    
T  33685859 aaaatatcttgtgttaagagtccatgataatactatattcttcatttaatctaatggacataatcaacttttacatggtgggaaa 33685775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 8204173 - 8204119
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  8204173 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 8204119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 33002811 - 33002865
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  33002811 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 15184012 - 15184065
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  15184012 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 41882297 - 41882190
Alignment:
Q  2 aggagagagtctgaaaaaatatctagtgtt-aagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaa 100  Q
    |||||||||| ||||||| ||||||||||| |||||||||| |||||||||||||||||| || |||||| |||||  ||||||||| | ||| ||||||    
T  41882297 aggagagagtgtgaaaaa-tatctagtgtttaagagtccatgataataccatgttcttcatttgatccaatagtcagaatcaactttcctatggtgggaa 41882199  T
Q  101 acaactccc 109  Q
    || ||||||    
T  41882198 actactccc 41882190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 41884162 - 41884263
Alignment:
Q  16 aaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttc 115  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||| || ||| || ||| |  ||||||||| | ||| |||||||||| | ||||||||    
T  41884162 aaaaatttctagtgttaagagtccatgataatatcatgttcttcatttgatctaatagttagaatcaactttcctatggtgggaaacaatttcccttttc 41884261  T
Q  116 ca 117  Q
    ||    
T  41884262 ca 41884263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 51974517 - 51974436
Alignment:
Q  51 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| |||||| || || || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  51974517 atgttcttcatttaatctaatagacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 51974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 43737973 - 43738028
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 133  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  43737973 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacctg 43738028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 48972440 - 48972494
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||||||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  48972440 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatggcacct 48972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 16270260 - 16270207
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  16270260 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 23440860 - 23440913
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  23440860 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 42915731 - 42915829
Alignment:
Q  3 ggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaac 102  Q
    ||||||||| |||||| ||||||||||||||||||| || |||||||||||||||| | |||||  || |||||| ||||||||| | ||| ||||||||    
T  42915731 ggagagagtgtgaaaa-atatctagtgttaagagtctatgataataccatgttctttatttaatttaatagtcaaaatcaactttcctatggtgggaaac 42915829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 41859390 - 41859308
Alignment:
Q  51 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 133  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  41859390 atgttcttcatttaatctaacggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 41859308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 43924537 - 43924490
Alignment:
Q  84 cttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||| ||||| |||||||||||| |||||| |||||||||||||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 5034951 - 5034893
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctgtca 136  Q
    |||||||||| ||||| ||| ||| ||||| ||||| |||||||||||| |||||||||    
T  5034951 gatcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacctgtca 5034893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 12350013 - 12349967
Alignment:
Q  85 ttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    ||||||||| |||||||||||| |||||| |||||||||| ||||||    
T  12350013 ttttccatggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 34992259 - 34992313
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  34992259 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacct 34992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 38023677 - 38023624
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||||||||||||| ||| || || ||||| |||||||||||| ||||    
T  38023677 gatcaacttttccatgatggaaaagaattctcctttcccaaattaaatgacacc 38023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 4058949 - 4059046
Alignment:
Q  16 aaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttt 113  Q
    |||||||||||||||||| |||| || ||||||||||||||| || || ||| || |||||| ||||||||| | ||| |||||||| | ||||||||    
T  4058949 aaaaatatctagtgttaacagtctatgataataccatgttctccatttgatctaatagtcaaaatcaactttcctatggtgggaaactagtccccttt 4059046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 37548051 - 37547997
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||    
T  37548051 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 37547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 44154978 - 44155024
Alignment:
Q  79 atcaacttttccatgatgggaaacaactccccttttccaaattaaat 125  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||    
T  44154978 atcaacttttccatcatgggaaacaacttccctttcccaaattaaat 44155024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 21471097 - 21471016
Alignment:
Q  51 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  21471097 atgttcttcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 21471016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 30545434 - 30545487
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacctgtc 135  Q
    |||||| |||| ||||||||||||| |||||| |||||||||||| ||||||||    
T  30545434 aactttcccatcatgggaaacaacttccctttcccaaattaaatggcacctgtc 30545487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 37546563 - 37546612
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  37546563 aactttcccatgatgggaaacaactcccctttcccattttaaatgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 41043329 - 41043377
Alignment:
Q  84 cttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  41043329 cttttccatgatgggaaaaaactagcctttcccaaattaaatgccacct 41043377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 14573314 - 14573261
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  14573314 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 21471949 - 21472002
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  21471949 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 30544779 - 30544727
Alignment:
Q  79 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    ||||||||| |||| ||||||||||||| || ||| |||||||||||| ||||    
T  30544779 atcaactttcccatcatgggaaacaacttccatttcccaaattaaatggcacc 30544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 26246310 - 26246412
Alignment:
Q  15 aaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactcccctttt 114  Q
    |||||||||||| |||||| |||| || ||||||||||||||| || || ||  || || ||| ||||||||| | ||| |||||||| | |||||||||    
T  26246310 aaaaaatatctattgttaacagtctatgataataccatgttctccatttgatataatagccaaaatcaactttcctatggtgggaaactagtcccctttt 26246409  T
Q  115 cca 117  Q
    |||    
T  26246410 cca 26246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 668259 - 668179
Alignment:
Q  51 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  668259 atgttcttcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 37468963 - 37468908
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 133  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  37468963 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 37468908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 38071951 - 38071897
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||||||||||| ||||| ||||| | |||||||||| |||||    
T  38071951 gatcaactttcccatgatgggaaagaactctcctttcctaaattaaatggcacct 38071897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 38778907 - 38778853
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  38778907 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 38778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 46759252 - 46759310
Alignment:
Q  73 gtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||| | |||| | ||||||||||||||||||||||| ||| | |||||||||||    
T  46759252 gtcaagattagctttgctatgatgggaaacaactcccctttcccatactaaatgccacc 46759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 17145675 - 17145622
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  17145675 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 27599260 - 27599211
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||| ||||| ||||||||||||||||||| |||  ||||||||||||    
T  27599260 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 27600094 - 27600143
Alignment:
Q  82 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||| ||||| ||||||||||||||||||| |||  ||||||||||||    
T  27600094 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 37469000 - 37469053
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  37469000 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 38779558 - 38779611
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  38779558 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 7677804 - 7677852
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  7677804 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 46756318 - 46756270
Alignment:
Q  83 acttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    ||||||||||| ||| |||||||| |||||| |||||||||| ||||||    
T  46756318 acttttccatggtggaaaacaacttccctttcccaaattaaacgccacc 46756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 27274 - 27221
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||    
T  27274 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 27570 - 27623
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    |||||||||| ||||| ||||||| ||||| |||||||||||||||||| ||||    
T  27570 gatcaactttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 32490190 - 32490238
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  32490190 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatg 32490238  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 36750432 - 36750486
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  36750432 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 36750486  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 38337478 - 38337528
Alignment:
Q  84 cttttccatgatgggaaacaactccccttttccaaattaaatgccacctgt 134  Q
    |||| ||||| |||||||||||| |||||| |||||||||| |||||||||    
T  38337478 ctttcccatggtgggaaacaacttccctttcccaaattaaacgccacctgt 38337528  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 36750098 - 36750050
Alignment:
Q  78 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 126  Q
    |||||||||||||||| ||| ||| ||||| ||||| ||||||||||||    
T  36750098 gatcaacttttccatggtggaaaagaactctcctttcccaaattaaatg 36750050  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 38923661 - 38923713
Alignment:
Q  79 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 131  Q
    ||||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||    
T  38923661 atcaacttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 43218 - 43252
Alignment:
Q  83 acttttccatgatgggaaacaactccccttttcca 117  Q
    ||||| |||||||||||||||||||||||||||||    
T  43218 actttcccatgatgggaaacaactccccttttcca 43252  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 156 - 209
Alignment:
Q  79 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 132  Q
    ||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  156 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

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