View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6986_high_8 (Length: 472)
Name: NF6986_high_8
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_high_8 |
 | |
|
| [»] scaffold0026 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0026 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 43 - 454
Target Start/End: Complemental strand, 102773 - 102362
Alignment:
| Q |
43 |
gacaaaataaaataatgaaagtttaattagtagtagtatgttagtattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaact |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
102773 |
gacaaaataaaataatgaaagtttaattagtagtagtatgttagtattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaact |
102674 |
T |
|
| Q |
143 |
tcttcaagtttgattcactaacagttactttgccagccttcctcagttgaactgctgattcacatgtctaaaacaatttaagagacacaaatagcttaga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
102673 |
tcttcaagtttgattcactaacagttactttgccagccttcctcagttgaactgctgattcacatgtctataacaatttaagagacacaaatagcttaga |
102574 |
T |
|
| Q |
243 |
gcctaattaattgtaattaatcaataaattaatggatgctaagtgttaagcaaggttaccatgagaaagacagacatggcatgaggcttgagcttaggat |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
102573 |
gcctaattaattgtaattaatcaataaattaatggatgctaagtgttaagcaaggttaccatgagaaagacagacatggcatgaggcttgagcttaggat |
102474 |
T |
|
| Q |
343 |
tttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtcataatcaattgttcaa |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
102473 |
tttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtcataatcaattgttcaa |
102374 |
T |
|
| Q |
443 |
aaataatgttgt |
454 |
Q |
| |
|
|||||||||||| |
|
|
| T |
102373 |
aaataatgttgt |
102362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 298 - 427
Target Start/End: Complemental strand, 100441 - 100312
Alignment:
| Q |
298 |
ttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctgg |
397 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||| |||||||||| || | ||| |||||||| |
|
|
| T |
100441 |
ttaccatgagaaagacagacatagcatgtggcttgagcttaggattatgttccaaagggacatttgaatcttttaagaatgaaaacatttgtttagctgg |
100342 |
T |
|
| Q |
398 |
tggagcaatctcaaaaattctaacatgtca |
427 |
Q |
| |
|
|||||||||||| | ||||||||| |||| |
|
|
| T |
100341 |
tggagcaatctccagtattctaacaagtca |
100312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 100758 - 100631
Alignment:
| Q |
87 |
tattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactttgccagccttcctc |
186 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |||||||| |||||||| || || || ||||| |||||||| | | |
|
|
| T |
100758 |
tattacctcaaaatgttcatcttgtacaccagttttgaaatgagtggcacctaatttcttcaaatttgattctctgactgtgacttttccagccttgcgc |
100659 |
T |
|
| Q |
187 |
agttgaactgctgattcacatgtctaaa |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
100658 |
agttgaactgctgactcacatgtctaaa |
100631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 260 - 453
Target Start/End: Original strand, 25847731 - 25847921
Alignment:
| Q |
260 |
taatcaataaattaatggatgctaagtgttaagcaaggttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaaca |
359 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
25847731 |
taattaataaattaatggataataactgttaagtaagcttaccataagaaagacagacatggcatgaggcttgagcttaggattgtgctccaatggaaca |
25847830 |
T |
|
| Q |
360 |
tttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtcataatcaattgttcaaaaataatgttg |
453 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25847831 |
tttgaatcttttaagaatgagaacaattgcttagctggtggagcaatctcaaggattctaacatgtcataatcaa---ttcaaaaataatgttg |
25847921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 25847515 - 25847654
Alignment:
| Q |
73 |
tagtagtatgttagtattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
25847515 |
tagtagtatgttagtattacctcaaaatgctcatcttttacaccagttttgaaatgagtggcacctaactttttcaagtttgattctctaacagtgactt |
25847614 |
T |
|
| Q |
173 |
tgccagccttcctcagttgaactgctgattcacatgtcta |
212 |
Q |
| |
|
| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
25847615 |
taccagccttacgtagttgaactgctgattcacatgtcta |
25847654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 298 - 427
Target Start/End: Original strand, 25849746 - 25849875
Alignment:
| Q |
298 |
ttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctgg |
397 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || | |||||||||||| |
|
|
| T |
25849746 |
ttaccatgagaaaaacagacatagcatgaggcttaagcttaggattttgctccaaaggaacatttgaatcttttaagaatgaaaacatttgcttagctgg |
25849845 |
T |
|
| Q |
398 |
tggagcaatctcaaaaattctaacatgtca |
427 |
Q |
| |
|
|||||||||||| | ||||||||| |||| |
|
|
| T |
25849846 |
tggagcaatctccagtattctaacaagtca |
25849875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 25845535 - 25845656
Alignment:
| Q |
298 |
ttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctgg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||| ||||||||| | ||||||||||| |||| | ||||| |
|
|
| T |
25845535 |
ttaccatgagaaagacagacatggcatgtggcttgagcttggtgtttttctccaaaggaacttttgaatctttcaagaatgagaacagtttttgagctga |
25845634 |
T |
|
| Q |
398 |
tggagcaatctcaaaaattcta |
419 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
25845635 |
tggagcaatctcaaatattcta |
25845656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 25849471 - 25849594
Alignment:
| Q |
89 |
ttacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactttgccagccttcctcag |
188 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||| || || | ||||| |||||||| | ||| |
|
|
| T |
25849471 |
ttacctcaaaatgttcatcttgcacaccagttttgaaatgagtggcacctaacttcttcaaatttgattctctcactctgactttaccagccttacgcag |
25849570 |
T |
|
| Q |
189 |
ttgaactgctgattcacatgtcta |
212 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25849571 |
ctgaactgctgattcacatgtcta |
25849594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 25845181 - 25845303
Alignment:
| Q |
90 |
tacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactttgccagccttcctcagt |
189 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||||| | |||||||| || |||||| ||||||| || || || ||||| || | || | || | |
|
|
| T |
25845181 |
tacctcaaaatgctcgtctactacaccatatttaaaatggttagcacctaattttttcaagcttgattctctgaccgtaactttaccggattttcgcaat |
25845280 |
T |
|
| Q |
190 |
tgaactgctgattcacatgtcta |
212 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25845281 |
tgaactgctgattcacatgtcta |
25845303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University