View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_high_9 (Length: 470)
Name: NF6986_high_9
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 45365362 - 45365541
Alignment:
| Q |
16 |
gaatcaagtggaaaaactatgattcataattcgttttctgttacgatgaacttcgcggtagcgtttgcattattctatctaatcacggtggagtcatggc |
115 |
Q |
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| T |
45365362 |
gaatcaagtggaaaaactatgattcataattcgttttctgttacgatgaacttcgcggtggcgtttgcattattctatctaatcacggtggagtcatggc |
45365461 |
T |
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| Q |
116 |
gtgttcactcacaagaaccgaagaagctttatgtgaacatgacgctcgttaacaacgcacgtgaaaccggtgcttgtaag |
195 |
Q |
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| T |
45365462 |
gtgttcactcacaagaaccgaagaagctttatgtgaacatgactctcgttaacaacgcacgcgaaaccggtgcttgtaag |
45365541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 45382128 - 45382307
Alignment:
| Q |
16 |
gaatcaagtggaaaaactatgattcataattcgttttctgttacgatgaacttcgcggtagcgtttgcattattctatctaatcacggtggagtcatggc |
115 |
Q |
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| T |
45382128 |
gaatcaagtggaaaaactatgattcataattcgttttctgttacgatgaacttcgcggtggcgtttgcattattctatctaatcacggtggagtcatggc |
45382227 |
T |
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| Q |
116 |
gtgttcactcacaagaaccgaagaagctttatgtgaacatgacgctcgttaacaacgcacgtgaaaccggtgcttgtaag |
195 |
Q |
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| T |
45382228 |
gtgttcactcacaagaaccgaagaagctttatgtgaacatgactctcgttaacaacgcacgcgaaaccggtgcttgtaag |
45382307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 283 - 435
Target Start/End: Original strand, 45365629 - 45365781
Alignment:
| Q |
283 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
382 |
Q |
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| T |
45365629 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
45365728 |
T |
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| Q |
383 |
ggtatattcatatttttctcattgttctatttaagttattttaaatgatatat |
435 |
Q |
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| T |
45365729 |
ggtatattcatatttttctcattgttctattgaagttattttaaatgatatat |
45365781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 283 - 430
Target Start/End: Original strand, 45382395 - 45382542
Alignment:
| Q |
283 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
382 |
Q |
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| T |
45382395 |
agtgatgtaaatttgtagtttgtttggatggaagtttaccggcgtatcatttggatagaggatttggagctggtgaagacaattggcttctacaatttga |
45382494 |
T |
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| Q |
383 |
ggtatattcatatttttctcattgttctatttaagttattttaaatga |
430 |
Q |
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| T |
45382495 |
ggtatattcatatttttctcattgttctgtttaagttattttaaatga |
45382542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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