View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_10 (Length: 391)
Name: NF6986_low_10
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 90 - 374
Target Start/End: Complemental strand, 38091367 - 38091083
Alignment:
| Q |
90 |
gcaaaacaatattcaacttttatatgttttaatcaataaatatggatctcatttgagaggattaataaattcaatctgatttctatttgatatacaatta |
189 |
Q |
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| T |
38091367 |
gcaaaacaatattcaacttttatatgttttaatcaataaatatggatctcttttgagaggattaataaattcaatctgatttctatttgatatacaatta |
38091268 |
T |
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| Q |
190 |
taaataaaattgatgatgtctcttatggatcggattctcccctgcattgnnnnnnnnagttccaagtaagaagtatgtgaaaattcatggtttaagagct |
289 |
Q |
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| T |
38091267 |
taaataaaattgatgatgtctcttatggatcggattctcccctgcattgttttttttagttccaagtaagaagtatgtgaaaattcatggtttaagagct |
38091168 |
T |
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| Q |
290 |
aaattctctataannnnnnnctgctctcttttctctagcacacaagattgattaaaacaatgatcaatacatttgaagtgaatgt |
374 |
Q |
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| T |
38091167 |
aaattctctacaatttttttctgctctcttttctctagcacacaagatcgattaaaacaatgatcaatacatttgaagtgaatgt |
38091083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 38091618 - 38091537
Alignment:
| Q |
17 |
ttttttacatggaattaaatcataaacctccataagtataagaaccaaaatgaagaagtggcgacaagtatgagcaaaacaa |
98 |
Q |
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| T |
38091618 |
ttttttacatggaattaaatcagaaacctccataagtataagaaccaaaatgaagaagtggcgacaagtatgagcaaaacaa |
38091537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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