View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_13 (Length: 335)
Name: NF6986_low_13
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 13856011 - 13855702
Alignment:
| Q |
11 |
agaatatcaggatcagcaccaaatgtaaaacaggtgtgaatctgttaaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataac |
110 |
Q |
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| T |
13856011 |
agaaaatcaggatcagcaccaaatgtaaaacaggtgtgaatctgttcaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataac |
13855912 |
T |
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| Q |
111 |
atttctaacacagcataatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatattt |
210 |
Q |
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| T |
13855911 |
atttctaacacagcataatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatat |
13855812 |
T |
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| Q |
211 |
acaacaactttaaaattgttcaaatttacataagggcaagggaccatgacagactaacatcaatagcataactttctgttttggttctaaattttggatc |
310 |
Q |
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| T |
13855811 |
acaacaactttaaaattgttcaaatttacataagggcaagggaccatgacagactaacatcaatggcataactttctgttttggttctaaattttggatc |
13855712 |
T |
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| Q |
311 |
tagcttatag |
320 |
Q |
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|||||||||| |
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| T |
13855711 |
tagcttatag |
13855702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 13852126 - 13851840
Alignment:
| Q |
17 |
tcaggatcagcaccaaatgtaaaacaggtgtgaatctgttaaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataacatttct |
116 |
Q |
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| T |
13852126 |
tcaggatcagcaccaaatgtaaaacaggtgtgaatctgtgcaatgtcaaataaaaccatatatcagtgcagaacatgtatgcaaaagatataaca----- |
13852032 |
T |
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| Q |
117 |
aacacagcataatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatttacaaca |
216 |
Q |
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| T |
13852031 |
-----------atcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaagcttgtgattgaaatatacacacatatatacaaca |
13851943 |
T |
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| Q |
217 |
actttaaaattgttcaaatttacataagggcaagggaccatgacagactaacatcaatagcataactttctgttttggttctaaattttggatctagctt |
316 |
Q |
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| T |
13851942 |
actttaaaatt-ttcaaatttacataagggcaagggaccccgatagactaacatcaaaggcataactttctgttttggttcttaattttggatctagctt |
13851844 |
T |
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