View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_14 (Length: 329)
Name: NF6986_low_14
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 33636008 - 33636120
Alignment:
| Q |
164 |
cagcaaaaatgtgtaatgtttaaagtttgatatttataaaatactagatacatgagaaagcgcaaggagctttattgtaactaattatttgtcaaaaata |
263 |
Q |
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| T |
33636008 |
cagcaaaaatgtgtaatgtttaaagtttgatatttataaaatactagatacatgagaaagcgcaaggagctttattgtaactaattatttgtcaaaaata |
33636107 |
T |
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| Q |
264 |
agtagttttatag |
276 |
Q |
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| T |
33636108 |
agtagttttatag |
33636120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 243 - 329
Target Start/End: Original strand, 33636121 - 33636205
Alignment:
| Q |
243 |
actaattatttgtcaaaaataagtagttttatagtgttccctatatagtggcaaacattagtcacatgtgtactcactgttctaagt |
329 |
Q |
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| T |
33636121 |
actaattatttgtccaaa-taagtagtttt-tagtgttccctatatagtggcaaacattagtcacatgtgtactcattgttctaagt |
33636205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 33635961 - 33635990
Alignment:
| Q |
119 |
tcattcctcctacttttaattgtgtaatga |
148 |
Q |
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| T |
33635961 |
tcattcctcctacttttaattgtgtaatga |
33635990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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