View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_15 (Length: 291)
Name: NF6986_low_15
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 35695982 - 35695703
Alignment:
| Q |
13 |
aatatgagaggaagccatgtgaacaagttgaagtagtgattcatt-gcaaccaattataaggagaatagttttgaagtttcaatgaccaattcaaatatg |
111 |
Q |
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| T |
35695982 |
aatatgagaggaagccatgtgaacaagttgaagtagtgtttcatttgcaaccaattataaggagaatagttttgaagtttcaatgaccaattcaaatatg |
35695883 |
T |
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| Q |
112 |
aatgaaagacatccttataaatatgtgatccttaaatagtgtgtattaaatgagaacgatgtgggaagaaatatcattttaaatttataaataaagaata |
211 |
Q |
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| T |
35695882 |
aatgaaagacatccttataaatatgtgatccttaaatagtgtgtattaaatgagaacgatgtgggaagaaatatcattttaaatttataaataaagaata |
35695783 |
T |
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| Q |
212 |
aataaatgatgacagttagttggaggtacttaagtgattgaatacaatgcatatcgaatgagagttagttggaggtattt |
291 |
Q |
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| T |
35695782 |
aataaatgatgacagttagttggaggtacttaagtgattgaatacaatgcatttcgaatgagagtcagttggaggtattt |
35695703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 35695725 - 35695675
Alignment:
| Q |
220 |
atgacagttagttggaggtacttaagtgattgaatacaatgcatatcgaat |
270 |
Q |
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| T |
35695725 |
atgagagtcagttggaggtatttaagtgattgaatccaatgcatatcgaat |
35695675 |
T |
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