View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_19 (Length: 254)
Name: NF6986_low_19
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_19 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 45394856 - 45394613
Alignment:
| Q |
11 |
atattattacaagttcgtctttatgagtttggtcaaaagttcttttgcttatatattagtagagtactagcaacacattgtctattactagccaaaattt |
110 |
Q |
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| T |
45394856 |
atattattacaagttcgtctttatgagtttagtcgaaagttcttttgcttatatattagtagagtactagcaacacaatgtctattactagccaaaattt |
45394757 |
T |
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| Q |
111 |
atatggatcctactaaatcatgttgaacccattttcaaagtggcgaggctcatgattttgagataataatacataatgtattgaaagggtttggctccac |
210 |
Q |
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| T |
45394756 |
atatggatcctactaaatcatgttgaacccattttcaaagtggtgaggctcatgattttgagataataatacataatgtattgaaagggtttggctccac |
45394657 |
T |
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| Q |
211 |
taaagtgagttattaataaagtgagaaattaagggttgatattt |
254 |
Q |
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| T |
45394656 |
taaagtgagttattaataaagtgagaaattaagggttgatattt |
45394613 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 33367940 - 33367884
Alignment:
| Q |
200 |
tttggctccactaaagtgagttattaataaagtg--agaaattaagggttgatattt |
254 |
Q |
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| T |
33367940 |
tttggctccactaaagtgagtagttaataaagtgaaaaaaatcaagggttgatattt |
33367884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 27087174 - 27087130
Alignment:
| Q |
210 |
ctaaagtgagttattaataaagtgag-aaattaagggttgatatt |
253 |
Q |
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| T |
27087174 |
ctaaagtgagatgttaataaagtgagaaaattaagggttgatatt |
27087130 |
T |
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