View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6986_low_21 (Length: 251)

Name: NF6986_low_21
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6986_low_21
NF6986_low_21
[»] chr2 (5 HSPs)
chr2 (1-236)||(35695218-35695456)
chr2 (21-129)||(34922008-34922116)
chr2 (3-99)||(42006535-42006631)
chr2 (5-129)||(35021154-35021277)
chr2 (26-65)||(1642476-1642515)
[»] scaffold0633 (1 HSPs)
scaffold0633 (1-130)||(8852-8981)
[»] chr4 (15 HSPs)
chr4 (21-130)||(43365821-43365930)
chr4 (21-130)||(44363321-44363430)
chr4 (47-113)||(12499238-12499304)
chr4 (21-135)||(15562131-15562245)
chr4 (5-130)||(1351449-1351573)
chr4 (25-73)||(11996352-11996401)
chr4 (21-70)||(51871683-51871732)
chr4 (21-121)||(18879119-18879219)
chr4 (54-130)||(51871598-51871674)
chr4 (88-135)||(12499032-12499079)
chr4 (88-130)||(11996004-11996046)
chr4 (53-122)||(6216420-6216488)
chr4 (88-136)||(6216213-6216261)
chr4 (21-65)||(40838042-40838086)
chr4 (91-135)||(44362929-44362973)
[»] chr1 (9 HSPs)
chr1 (1-130)||(26767642-26767770)
chr1 (1-130)||(41666248-41666377)
chr1 (24-120)||(9388826-9388922)
chr1 (24-136)||(7191879-7191991)
chr1 (21-103)||(38275954-38276036)
chr1 (22-130)||(43416253-43416359)
chr1 (21-113)||(43344966-43345056)
chr1 (21-136)||(43670895-43671009)
chr1 (21-113)||(12857469-12857561)
[»] chr8 (5 HSPs)
chr8 (21-135)||(13267811-13267924)
chr8 (21-130)||(39186175-39186285)
chr8 (21-130)||(3207641-3207750)
chr8 (21-135)||(32089226-32089340)
chr8 (25-136)||(24587104-24587215)
[»] chr6 (10 HSPs)
chr6 (21-135)||(28587813-28587927)
chr6 (21-129)||(10244487-10244595)
chr6 (21-130)||(6196722-6196831)
chr6 (6-72)||(33446945-33447011)
chr6 (21-130)||(2236938-2237047)
chr6 (21-130)||(4838001-4838110)
chr6 (88-130)||(6198102-6198144)
chr6 (23-65)||(35187570-35187612)
chr6 (88-129)||(28587639-28587680)
chr6 (21-65)||(2145556-2145600)
[»] chr7 (15 HSPs)
chr7 (21-130)||(3565568-3565677)
chr7 (21-129)||(26472004-26472110)
chr7 (21-129)||(26548444-26548550)
chr7 (21-100)||(45871760-45871839)
chr7 (24-74)||(27567407-27567457)
chr7 (5-129)||(37327479-37327603)
chr7 (25-66)||(40717645-40717686)
chr7 (23-121)||(39751209-39751307)
chr7 (21-102)||(17298691-17298772)
chr7 (21-130)||(40744582-40744691)
chr7 (22-65)||(11752910-11752953)
chr7 (88-135)||(29366368-29366415)
chr7 (71-136)||(42055302-42055366)
chr7 (5-122)||(44857848-44857964)
chr7 (83-135)||(37327314-37327366)
[»] chr5 (10 HSPs)
chr5 (21-130)||(13639563-13639672)
chr5 (21-130)||(39741465-39741574)
chr5 (1-120)||(40324424-40324543)
chr5 (5-121)||(5548120-5548236)
chr5 (21-122)||(3577572-3577673)
chr5 (22-130)||(13361006-13361114)
chr5 (40-130)||(42552562-42552652)
chr5 (25-129)||(39917416-39917520)
chr5 (89-130)||(3577791-3577832)
chr5 (21-70)||(37510290-37510339)
[»] scaffold0122 (1 HSPs)
scaffold0122 (12-130)||(17717-17835)
[»] chr3 (6 HSPs)
chr3 (21-130)||(39492307-39492416)
chr3 (5-135)||(38216098-38216229)
chr3 (47-130)||(14742178-14742259)
chr3 (88-135)||(38216347-38216394)
chr3 (89-135)||(39450637-39450683)
chr3 (5-122)||(43071724-43071839)
[»] scaffold0157 (2 HSPs)
scaffold0157 (47-113)||(21173-21239)
scaffold0157 (88-135)||(21398-21445)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35695456 - 35695218
Alignment:
Q  1 taagaaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaata 100  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||  |||||||| |||||||||||||    
T  35695456 taagaaaatttccttgaatacttcatttgaaacatgttatatcaccatattttagataaaatattagataaagggaccaaagttgtcgaattttaaaata 35695357  T
Q  101 aggggaccaattttacaaaatggtgaaaat---gggggatatagcatgttttataacatgttatcaccatcaaataattattcccccaaataatttattc 197  Q
    ||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35695356 aggggaccaattttacaaaatggtgaaaatagggggggatataacatgttttataacatgttatcaccatcaaataattatttccccaaataatttattc 35695257  T
Q  198 ccccaaatttgtctccaatcaaataattttctttgaaag 236  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35695256 ccccaaatttgtctccaatcaaataattttctttgaaag 35695218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 34922116 - 34922008
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||||||||||||||||||||||||||  || |||||| ||| |||||  |||   || ||||||||||||| || ||| || ||| |||||    
T  34922116 cttcatttaaaacatgttatatcatcatattttagtgaagatattatatagagggaccaaaaccgtcgaattttaaaatagggagactaaatttgcaaaa 34922017  T
Q  121 tggtgaaaa 129  Q
    | |||||||    
T  34922016 tagtgaaaa 34922008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 42006535 - 42006631
Alignment:
Q  3 agaaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaat 99  Q
    |||||||| | |||||  ||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| |||  |||  |||| |||||||||||    
T  42006535 agaaaattcttttgaaaacttaatttaaaacatgtcatatcatcatattttcgacaaaatattatataaaaggaccaaaactgtgaaattttaaaat 42006631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 35021154 - 35021277
Alignment:
Q  5 aaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggg 104  Q
    ||||||||||||||  ||||||||||||||| | ||||||  ||||||||||||||| ||| |||| | |||  ||| ||||  || |||| |||| | |    
T  35021154 aaaattttcttgaaaacttcatttaaaacatatcatatcacaatattttagacaaaaaatttgatagaaggaccaaaattgtctaa-tttataataggag 35021252  T
Q  105 gaccaattttacaaaatggtgaaaa 129  Q
    |||||||||| ||||||| ||||||    
T  35021253 gaccaattttgcaaaatgatgaaaa 35021277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 1642476 - 1642515
Alignment:
Q  26 tttaaaacatgttatatcatcatattttagacaaaatatt 65  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  1642476 tttaaaaaatgttatatcatcatattttagaccaaatatt 1642515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 8981 - 8852
Alignment:
Q  1 taagaaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaata 100  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||  ||| ||||  |||  ||| |||||||||||||    
T  8981 taagaaaattttcttgaaaacttcatttaaaacatgttatgtcatcatattttagataaaatattatgtaatgggaccaaaactgtcgaattttaaaata 8882  T
Q  101 aggggaccaattttacaaaatggtgaaaat 130  Q
     ||| | |||||||| |||||| |||||||    
T  8881 ggggaatcaattttataaaatgatgaaaat 8852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 43365930 - 43365821
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |  |||  ||| ||||||||||||| | ||||||||||| |||||    
T  43365930 cttcatttaaaacatgttacatcatcatattttagacaaaatattagatagaggaaccaaaactgtcgaattttaaaatatgaggaccaattttgcaaaa 43365831  T
Q  121 tggtgaaaat 130  Q
    |||| |||||    
T  43365830 tggtaaaaat 43365821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 44363321 - 44363430
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||| | ||||||  |||||||||||||||||||  ||| |||||  ||| |||| ||||||||||||| ||||||||||||  |||||    
T  44363321 cttcatttaaaacatatcatatcacaatattttagacaaaatattttatagagggaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaa 44363420  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  44363421 tgatgaaaat 44363430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 12499238 - 12499304
Alignment:
Q  47 atattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattt 113  Q
    ||||||||||||||||||| |||| |||||  ||| |||| ||||||||||||| ||||||||||||    
T  12499238 atattttagacaaaatatttgatagagggaccaaaattgtcgaattttaaaatagggggaccaattt 12499304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 15562245 - 15562131
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||| ||||||||||||||||||   ||||||||||||| ||||||||| |||||  |||  |||  |||||||||||| ||||| |||||| | ||||    
T  15562245 cttcaattaaaacatgttatatcactgtattttagacaaattattagatagagggaccaaaactgtcaaattttaaaatagggggatcaatttcataaaa 15562146  T
Q  121 tggtgaaaatggggg 135  Q
    || | ||||| ||||    
T  15562145 tgataaaaatcgggg 15562131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 1351449 - 1351573
Alignment:
Q  5 aaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggg 104  Q
    ||||||| ||||||   |||||||||||||  | ||||||  |||||||||||||| |||| |||| |||||  ||| |||| ||||||||||||| | |    
T  1351449 aaaatttccttgaaaaattcatttaaaacaaatcatatcacaatattttagacaaa-tatttgatagagggaccaaaattgttgaattttaaaataggag 1351547  T
Q  105 gaccaattttacaaaatggtgaaaat 130  Q
    ||||||||| |||||||  |||||||    
T  1351548 gaccaatttcacaaaataatgaaaat 1351573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 11996352 - 11996401
Alignment:
Q  25 atttaaaacatgttatatcatcatattttagac-aaaatattagataaag 73  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  11996352 atttaaaacatgttatatcaccatattttaaacaaaaatattagataaag 11996401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 51871732 - 51871683
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagata 70  Q
    |||||| ||||||||||||||||| ||||||||||| ||| |||||||||    
T  51871732 cttcatctaaaacatgttatatcaccatattttagataaattattagata 51871683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 18879219 - 18879119
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||| | ||||||   ||||||||||||||||||  ||| || ||  ||| |||| ||||||||||||| || |||| ||||| |||||    
T  18879219 cttcatttaaaacatatcatatcacagtattttagacaaaatattttatagagtgaccaaaattgttgaattttaaaatagggcgaccgattttgcaaaa 18879120  T
Q  121 t 121  Q
    |    
T  18879119 t 18879119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 51871674 - 51871598
Alignment:
Q  54 agacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatggtgaaaat 130  Q
    ||||||| ||||||||| || || ||||| |||  |||||||||||| || ||||||||| | ||||||||||||||    
T  51871674 agacaaattattagatagagagactaaagctgtcaaattttaaaatacggagaccaatttcataaaatggtgaaaat 51871598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 12499079 - 12499032
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaatggggg 135  Q
    ||||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  12499079 gaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggg 12499032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 11996046 - 11996004
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaat 130  Q
    |||||||||||||||||||||||||| |||||| | |||||||    
T  11996046 gaattttaaaataaggggaccaatttcacaaaaagatgaaaat 11996004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 6216420 - 6216488
Alignment:
Q  53 tagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatg 122  Q
    ||||||||||||| |||| |||||  ||||||||  ||||||||||| |||||| ||||||| |||||||    
T  6216420 tagacaaaatatttgatagagggaccaaagttgtcaaattttaaaat-aggggaacaattttgcaaaatg 6216488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 6216261 - 6216213
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaatggggga 136  Q
    ||||||||||||| ||||||||||| | |||| |||||||||| |||||    
T  6216261 gaattttaaaatagggggaccaattctgcaaagtggtgaaaatagggga 6216213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 40838042 - 40838086
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatatt 65  Q
    |||||||| |||| ||| ||||||||||||||||||| |||||||    
T  40838042 cttcattttaaacttgtcatatcatcatattttagactaaatatt 40838086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 44362973 - 44362929
Alignment:
Q  91 ttttaaaataaggggaccaattttacaaaatggtgaaaatggggg 135  Q
    |||||||| | ||||||||||| ||||||||||||||||| ||||    
T  44362973 ttttaaaacagggggaccaattctacaaaatggtgaaaatagggg 44362929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 26767770 - 26767642
Alignment:
Q  1 taagaaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaata 100  Q
    |||||||| |||||| ||  ||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||  |||  |||  |||||||||||     
T  26767770 taagaaaactttcttaaaaacttcatttagaacatgttatatcatcatattttagacaaaatataatatagagggaccaaaactgtcaaattttaaaat- 26767672  T
Q  101 aggggaccaattttacaaaatggtgaaaat 130  Q
    |||||| |||||||||||||||||||||||    
T  26767671 aggggaacaattttacaaaatggtgaaaat 26767642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 41666248 - 41666377
Alignment:
Q  1 taagaaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaata 100  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||  ||| ||||  |||  ||| |||||||||||||    
T  41666248 taagaaaattttcttgaaaacttcatttaaaacatgttatgtcatcatattttagataaaatattatgtaatgggaccaaaactgtcgaattttaaaata 41666347  T
Q  101 aggggaccaattttacaaaatggtgaaaat 130  Q
     ||| | |||||||| |||||| |||||||    
T  41666348 ggggaatcaattttataaaatgatgaaaat 41666377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 9388922 - 9388826
Alignment:
Q  24 catttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||||||||| ||||||||| ||||||| | ||||| ||||| |||| |||| ||||||||||||| |||||||||||||||||||    
T  9388922 catttaaaacatgttatatcaccatattttaaacaaaatttgagatagagggactaaaattgtcgaattttaaaatagggggaccaattttacaaaa 9388826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 7191991 - 7191879
Alignment:
Q  24 catttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatgg 123  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||  ||| ||||||||||||| ||||||| ||||  |||||||     
T  7191991 catttaaaacatgttatatcaccatattttagacaaaattttagataaagggaccaaaactgtcgaattttaaaatatggggacctatttggcaaaatga 7191892  T
Q  124 tgaaaatggggga 136  Q
    | ||||| |||||    
T  7191891 ttaaaatagggga 7191879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 38275954 - 38276036
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataagg 103  Q
    ||||||||||||||| | ||||||  ||||||||||||| ||||| ||||||||||  ||| |||| ||||||||||||||||    
T  38275954 cttcatttaaaacatatcatatcacaatattttagacaacatatttgataaagggaccaaaattgttgaattttaaaataagg 38276036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 43416359 - 43416253
Alignment:
Q  22 ttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaat 121  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||  |||  ||| | |||||||||  || ||| ||||||| ||||||    
T  43416359 ttcatttaaaacatgttatatcaccatattttagacaaattattaaatagagggaccaaaactgtcg-attttaaaa-cagaggatcaattttgcaaaat 43416262  T
Q  122 ggtgaaaat 130  Q
    |||||||||    
T  43416261 ggtgaaaat 43416253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 43344966 - 43345056
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattt 113  Q
    ||||||||||||||| | ||||||  |||||||||||||  ||||  ||| ||||| |||| |||| ||||||||||||||||||| ||||||    
T  43344966 cttcatttaaaacatatcatatcacaatattttagacaa--tatttcatatagggactaaaattgtcgaattttaaaataaggggatcaattt 43345056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 43670895 - 43671009
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||| ||||||| |  |||||  ||||||||||||||||||   ||| |||||| ||| |||| |||||||||||||| | || ||||||  |||||    
T  43670895 cttcattaaaaacatatagtatcacaatattttagacaaaatatgtaatagagggatcaaaattgtcgaattttaaaataa-gagaacaatttcgcaaaa 43670993  T
Q  121 tggtgaaaatggggga 136  Q
    || ||||||| |||||    
T  43670994 tgatgaaaatagggga 43671009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 12857469 - 12857561
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattt 113  Q
    ||||||||||||||| | ||||||  ||||| ||||||||| ||| |||| || ||  ||| ||||  |||||||||||| | ||||||||||    
T  12857469 cttcatttaaaacatatcatatcacaatattctagacaaaaaatttgatagagagaccaaaattgtccaattttaaaataggaggaccaattt 12857561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 13267924 - 13267811
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||  |||  ||| |||||||||||| ||||||||||||||||||||    
T  13267924 cttcatttaaaacatgttatatcaccatattttaaacaaaatattagaaagagggaccaaaactgtcgaattttaaaat-aggggaccaattttacaaaa 13267826  T
Q  121 tggtgaaaatggggg 135  Q
    | || ||||| ||||    
T  13267825 tagtaaaaatagggg 13267811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 39186285 - 39186175
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaa-ttttaaaataaggggaccaattttacaaa 119  Q
    ||||||||||||||| | ||||||  ||||||||||||||||||  |||| |||||| ||| |||| ||| |||||||||| ||||||||||||| ||||    
T  39186285 cttcatttaaaacatatgatatcacaatattttagacaaaatatgtgatagagggatcaaaattgtcgaagttttaaaatagggggaccaattttgcaaa 39186186  T
Q  120 atggtgaaaat 130  Q
    ||| |||||||    
T  39186185 atgatgaaaat 39186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 3207750 - 3207641
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||| | ||||||  ||||||||||||||||||| |||| ||||| |||| |||| |||||||||||||  | ||||||||||  ||||    
T  3207750 cttcatttaaaacatatcatatcacaatattttagacaaaatatttgatagagggactaaaattgtcgaattttaaaatagagagaccaattttgtaaaa 3207651  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  3207650 tgatgaaaat 3207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 32089226 - 32089340
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||| || ||  |||  ||| ||| || |||||| |||||||||||| ||||||    
T  32089226 cttcatttaaaacatgttatatcaccatatttaagacaaattattagatagagagaccaaaactgtcgaacttcaaaatagggggaccaatttcacaaaa 32089325  T
Q  121 tggtgaaaatggggg 135  Q
     | ||||||| ||||    
T  32089326 agatgaaaatagggg 32089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 24587215 - 24587104
Alignment:
Q  25 atttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatggt 124  Q
    ||||||||||| | ||||||| | ||||||||||||||||| |||| |||||  ||| |||| ||||||||||||| || ||||||   |||||||| ||    
T  24587215 atttaaaacatatcatatcataacattttagacaaaatatttgatagagggaccaaaattgtcgaattttaaaatatggagaccaaaactacaaaatagt 24587116  T
Q  125 gaaaatggggga 136  Q
     ||||| |||||    
T  24587115 aaaaatagggga 24587104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 28587813 - 28587927
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| | | |||||  |||  ||| ||||||||||||| |||| |||| |||||||||    
T  28587813 cttcatttaaaacatgttatatcatcatattttagtcaagatattataaagagggaccaaaactgtcgaattttaaaataggggggccaaatttacaaaa 28587912  T
Q  121 tggtgaaaatggggg 135  Q
    |||||||||| ||||    
T  28587913 tggtgaaaatagggg 28587927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 10244487 - 10244595
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||| ||| |  |||  |||  |||||||||||| ||||||||||||| |||||    
T  10244487 cttcatttaaaacatgttatatcatcatattttagacaaaataaatgatataggaaccaaaactgtcaaattttaaaatagggggaccaattttgcaaaa 10244586  T
Q  121 tggtgaaaa 129  Q
    | |||||||    
T  10244587 tagtgaaaa 10244595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 6196831 - 6196722
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||| ||   ||||||  ||||||||||||||||||| |||| |||||  ||| |||| ||||||||||||| ||||||||||||   ||||    
T  6196831 cttcatttaaaatataacatatcacaatattttagacaaaatatttgatagagggaccaaaattgttgaattttaaaatagggggaccaatttcgtaaaa 6196732  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  6196731 tgatgaaaat 6196722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 33446945 - 33447011
Alignment:
Q  6 aaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaa 72  Q
    |||||||||| ||  ||| ||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  33446945 aaattttcttaaaaacttaattaaaaacatgatatatcaacatattttagacaaaatattagataaa 33447011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 2236938 - 2237047
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||| || | ||||||| ||||||||||||||||||  |||| |||||| ||| || |  ||||| ||| || ||||||||||||  |||||    
T  2236938 cttcatttaaaatatatcatatcataatattttagacaaaatatgtgatagagggatcaaaattataaaatttaaaattatggggaccaatttcgcaaaa 2237037  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  2237038 tgatgaaaat 2237047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 4838001 - 4838110
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||| | ||||||  |||||||| |||||||||| |||| | |||  ||| ||||  | |||||||||| ||||||||||||  |||||    
T  4838001 cttcatttaaaacatatcatatcacaatattttaaacaaaatatttgatagatggaccaaaattgtcaacttttaaaatagggggaccaatttcgcaaaa 4838100  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  4838101 tgatgaaaat 4838110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 6198102 - 6198144
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaat 130  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  6198102 gaattttaaaatagggggaccaattctacaaaatggtgaaaat 6198144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 35187612 - 35187570
Alignment:
Q  23 tcatttaaaacatgttatatcatcatattttagacaaaatatt 65  Q
    |||||||||||||||||| ||||| |||||||||| |||||||    
T  35187612 tcatttaaaacatgttatgtcatcgtattttagacgaaatatt 35187570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 28587680 - 28587639
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaa 129  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||    
T  28587680 gaattttaaaatagggggaccaaatttgcaaaatggtgaaaa 28587639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 2145600 - 2145556
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatatt 65  Q
    ||||||||||||||| | ||||||||||||||||| | |||||||    
T  2145600 cttcatttaaaacatatcatatcatcatattttagcctaaatatt 2145556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 3565568 - 3565677
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||   |||  ||| ||||| ||||| | ||  ||||||||| |||||    
T  3565568 cttcatttaaaacatgttatatcaccatattttagacaaaatattagatagagggtccaaaactgtcgaattataaaacagggaaaccaattttgcaaaa 3565667  T
Q  121 tggtgaaaat 130  Q
    | ||||||||    
T  3565668 tagtgaaaat 3565677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 26472004 - 26472110
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||| || ||||||||||||||||||| |||||||||| |||||||||| |||  ||| ||||||||||   |||||||||| |||  ||||    
T  26472004 cttcatttaaaatatattatatcatcatattttagtcaaaatattatataaagggatcaaaactgtcgaattttaaa--taggggaccaaatttggaaaa 26472101  T
Q  121 tggtgaaaa 129  Q
    |||||||||    
T  26472102 tggtgaaaa 26472110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 26548444 - 26548550
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||||||| || ||||||||||||||||||| |||||||||| |||||||||| |||  ||| ||||||||||   |||||||||| |||  ||||    
T  26548444 cttcatttaaaatatattatatcatcatattttagtcaaaatattatataaagggatcaaaactgtcgaattttaaa--taggggaccaaatttggaaaa 26548541  T
Q  121 tggtgaaaa 129  Q
    |||||||||    
T  26548542 tggtgaaaa 26548550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 45871839 - 45871760
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaata 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||  |||  ||| |||||||||||||    
T  45871839 cttcatttaaaacatgttatatcaccatattttagacaaaatattatatagagggaccaaaactgttgaattttaaaata 45871760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 27567457 - 27567407
Alignment:
Q  24 catttaaaacatgttatatcatcatattttagacaaaatattagataaagg 74  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27567457 catttaaaacatgttatatcatcatattttagacaaaattttagataaagg 27567407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 37327479 - 37327603
Alignment:
Q  5 aaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggg 104  Q
    |||||| |||||||  |||||||||||| || | ||||||  ||||||||||||||| ||| |||| |||||  ||| ||||  |||||||||||| |||    
T  37327479 aaaattctcttgaaaacttcatttaaaatatatcatatcacaatattttagacaaaaaatttgatagagggaccaaaattgtccaattttaaaatagggg 37327578  T
Q  105 gaccaattttacaaaatggtgaaaa 129  Q
    |||||||||  ||||||| ||||||    
T  37327579 gaccaatttcgcaaaatgatgaaaa 37327603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 40717645 - 40717686
Alignment:
Q  25 atttaaaacatgttatatcatcatattttagacaaaatatta 66  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  40717645 atttaaaacatgttatatcatcatattttagataaaatatta 40717686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 39751307 - 39751209
Alignment:
Q  23 tcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaat 121  Q
    |||||||||| ||||  ||||| ||||||||| |||||||||| |||  | |||  ||| |||| ||||||||||||  ||||||||||||| ||||||    
T  39751307 tcatttaaaatatgtcgtatcaccatattttaaacaaaatatttgatggaaggaccaaaattgtagaattttaaaatggggggaccaattttgcaaaat 39751209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 17298772 - 17298691
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataag 102  Q
    ||||||| ||||||||| ||| | ||||||||||||| ||||||| |||| || ||| | ||||||  ||||||||||||||    
T  17298772 cttcattcaaaacatgtcataccttcatattttagaccaaatatttgatagagagatcagagttgtcaaattttaaaataag 17298691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 40744582 - 40744691
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||||| |||||| ||||||||| || ||||||| ||| || || | |||  | || |||||||||| | || || |||||| | ||||    
T  40744582 cttcatttaaaacatgtcatatcaccatattttaaaccaaatatttgatgaaagggtcaaacctttgaaattttaaaacagggagatcaatttcataaaa 40744681  T
Q  121 tggtgaaaat 130  Q
    ||||||||||    
T  40744682 tggtgaaaat 40744691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 11752910 - 11752953
Alignment:
Q  22 ttcatttaaaacatgttatatcatcatattttagacaaaatatt 65  Q
    |||||||||||||||||||||||  ||| |||||||||||||||    
T  11752910 ttcatttaaaacatgttatatcactataatttagacaaaatatt 11752953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 29366415 - 29366368
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaatggggg 135  Q
    ||||||||||||| ||||||||||||| |||||| |||||||| ||||    
T  29366415 gaattttaaaatatggggaccaattttgcaaaattgtgaaaatagggg 29366368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 42055366 - 42055302
Alignment:
Q  71 aagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatggtgaaaatggggga 136  Q
    |||||||||||  |||  |||||||||||||||| ||||||| ||||||||||| ||||| |||||    
T  42055366 aagggattaaaactgtcaaattttaaaataaggg-accaattctacaaaatggtaaaaatagggga 42055302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 44857964 - 44857848
Alignment:
Q  5 aaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggg 104  Q
    ||||||| ||||||  ||||||||||||||| | | ||||  ||||||||||| ||||||| |||  |||||  ||| |||| ||||||| ||||| |||    
T  44857964 aaaatttccttgaaaacttcatttaaaacatatcaaatcacaatattttagactaaatatttgatggagggaacaaaattgtcgaatttt-aaatagggg 44857866  T
Q  105 gaccaattttacaaaatg 122  Q
    || ||||||  |||||||    
T  44857865 gatcaatttcgcaaaatg 44857848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 37327366 - 37327314
Alignment:
Q  83 ttgtggaattttaaaataaggggaccaattttacaaaatggtgaaaatggggg 135  Q
    |||| ||||||||||||| |||||||| || | ||||||||||||||| ||||    
T  37327366 ttgtcgaattttaaaatagggggaccatttctgcaaaatggtgaaaatagggg 37327314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 13639563 - 13639672
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||| | ||||||  ||||||||||||||||||  |||| |||||  ||| || | ||||||||||||| ||||||||||||| |||||    
T  13639563 cttcatttaaaacatatcatatcacaatattttagacaaaatatatgatagagggaccaaaattttagaattttaaaatagggggaccaattttgcaaaa 13639662  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  13639663 tgatgaaaat 13639672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 39741465 - 39741574
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||| | ||||||  ||||||||||||||||||| |||| |||||| ||| || | |||||||||||||||| || ||| || ||||||    
T  39741465 cttcatttaaaacatatcatatcacaatattttagacaaaatatttgatagagggatcaaaattatcgaattttaaaataaggagatcaaattcacaaaa 39741564  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  39741565 tgatgaaaat 39741574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 40324424 - 40324543
Alignment:
Q  1 taagaaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaata 100  Q
    |||||||||| |||||||  |  |||||||||| |||||||||||||||||||||||||||  ||||||| |  ||| |||  ||| |||||||||||||    
T  40324424 taagaaaattctcttgaaaacaccatttaaaacttgttatatcatcatattttagacaaaaatttagatagaatgatcaaaactgtcgaattttaaaata 40324523  T
Q  101 aggggaccaattttacaaaa 120  Q
     || ||| ||||||||||||    
T  40324524 gggagactaattttacaaaa 40324543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 5548236 - 5548120
Alignment:
Q  5 aaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggg 104  Q
    ||||||||||| ||   |||||||||||||| | | |||   ||||||||||||||||||| ||||||||||  ||| |||| |||||||||||||  ||    
T  5548236 aaaattttcttaaaaatttcatttaaaacatatcacatctcaatattttagacaaaatatttgataaagggaccaaaattgtcgaattttaaaatagagg 5548137  T
Q  105 gaccaattttacaaaat 121  Q
    ||||||||| |||||||    
T  5548136 gaccaatttaacaaaat 5548120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 3577673 - 3577572
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    ||||||||||||||| | ||||||  | ||||||||||||||||| |||| ||| |  ||| |||| ||||||||||||| |  |||||||||| |||||    
T  3577673 cttcatttaaaacatatcatatcacaaaattttagacaaaatatttgatagaggtaccaaaattgtcgaattttaaaataggaagaccaattttgcaaaa 3577574  T
Q  121 tg 122  Q
    ||    
T  3577573 tg 3577572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 13361114 - 13361006
Alignment:
Q  22 ttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaat 121  Q
    |||||||||||||| |  |||||  ||||||||||||||||||  |||| || ||| ||| |||| |||||||||||||||| || ||||||  ||||||    
T  13361114 ttcatttaaaacatatcgtatcacaatattttagacaaaatatgtgatagagagatcaaaattgtcgaattttaaaataaggagatcaatttcgcaaaat 13361015  T
Q  122 ggtgaaaat 130  Q
      |||||||    
T  13361014 aatgaaaat 13361006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 42552652 - 42552562
Alignment:
Q  40 tatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatggtgaaaat 130  Q
    |||||||||||||||||||||||||  | ||  | ||| | |  ||| |||||||||||||  |||||||||| |||||||||||||||||    
T  42552652 tatcatcatattttagacaaaatatgtgttagggagatcagaactgtcgaattttaaaatacagggaccaattctacaaaatggtgaaaat 42552562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 39917520 - 39917416
Alignment:
Q  25 atttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatggt 124  Q
    |||||||||||||||||| | | ||||||||| |||||||| |||  |||||  |||  ||| || ||| ||||||| || |||||||||| ||||| ||    
T  39917520 atttaaaacatgttatataaccgtattttagataaaatatttgatcgagggacaaaaagtgtcgagtttgaaaataaaggaaccaattttataaaattgt 39917421  T
Q  125 gaaaa 129  Q
    |||||    
T  39917420 gaaaa 39917416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 3577791 - 3577832
Alignment:
Q  89 aattttaaaataaggggaccaattttacaaaatggtgaaaat 130  Q
    |||||||||||| ||||||||||| | |||||||||||||||    
T  3577791 aattttaaaatagggggaccaattcttcaaaatggtgaaaat 3577832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 37510339 - 37510290
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagata 70  Q
    |||||| |||||||||| |||||||||||||||||||  |||||| ||||    
T  37510339 cttcatataaaacatgtcatatcatcatattttagacctaatatttgata 37510290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 17717 - 17835
Alignment:
Q  12 tcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaat 111  Q
    |||||||  ||||||||||||||| | ||||||  ||||||||||||||||||| |||| |  ||  ||| |||||||||||||||| |  | |||||||    
T  17717 tcttgaaaacttcatttaaaacatatcatatcacaatattttagacaaaatatttgatagaatgaccaaaattgtggaattttaaaacagagagaccaat 17816  T
Q  112 tttacaaaatggtgaaaat 130  Q
    ||||||||||| |||||||    
T  17817 tttacaaaatgatgaaaat 17835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 39492416 - 39492307
Alignment:
Q  21 cttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaa 120  Q
    |||||||| |||||| | ||||||  ||||||||||||||||||| |||| |||||  ||  |||| |||||||| |||| ||||||||||||| |||||    
T  39492416 cttcatttgaaacatatcatatcacaatattttagacaaaatatttgatagagggaccaacattgtcgaattttataatagggggaccaattttgcaaaa 39492317  T
Q  121 tggtgaaaat 130  Q
    || |||||||    
T  39492316 tgatgaaaat 39492307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 38216229 - 38216098
Alignment:
Q  5 aaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaata-agg 103  Q
    |||||| |||||||  ||| ||||||||||| | ||||||  ||||||||||||||||||| |||| || ||  ||| |||| |||||||||||||  ||    
T  38216229 aaaattctcttgaaaactttatttaaaacatatcatatcacaatattttagacaaaatatttgatagagcgaccaaaattgtcgaattttaaaatagggg 38216130  T
Q  104 ggaccaattttacaaaatggtgaaaatggggg 135  Q
    |||||||||| ||||||||  |||||| ||||    
T  38216129 ggaccaatttcacaaaatgaagaaaatagggg 38216098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 14742178 - 14742259
Alignment:
Q  47 atattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattttacaaaatggtgaaaat 130  Q
    |||||||||||||  |||| |||| |||||  ||| |||| ||||||||||||| ||||||||||||  ||||||| |||||||    
T  14742178 atattttagacaa--tatttgatagagggaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaatgatgaaaat 14742259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 38216347 - 38216394
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaatggggg 135  Q
    ||||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  38216347 gaattttaaaatagggggaccaattatgcaaaatggtgaaaatagggg 38216394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 39450683 - 39450637
Alignment:
Q  89 aattttaaaataaggggaccaattttacaaaatggtgaaaatggggg 135  Q
    |||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  39450683 aattttaaaatagggggaccaattctgcaaaatggtgaaaatagggg 39450637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 43071724 - 43071839
Alignment:
Q  5 aaaattttcttgaatgcttcatttaaaacatgttatatcatcatattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggg 104  Q
    |||||| |||||||  |||| |||||||||| | ||||||  |||||||||||  |||||| |||| | |||  ||| |||| |||||||||||||   |    
T  43071724 aaaattctcttgaaaacttcgtttaaaacatatcatatcacaatattttagac--aatatttgatagaaggaccaaaattgtcgaattttaaaatagatg 43071821  T
Q  105 gaccaattttacaaaatg 122  Q
    ||||||||| ||||||||    
T  43071822 gaccaatttcacaaaatg 43071839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 21239 - 21173
Alignment:
Q  47 atattttagacaaaatattagataaagggattaaagttgtggaattttaaaataaggggaccaattt 113  Q
    ||||||||||||||||||| |||| |||||  ||| |||| ||||||||||||| ||||||||||||    
T  21239 atattttagacaaaatatttgatagagggaccaaaattgtcgaattttaaaatagggggaccaattt 21173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 21398 - 21445
Alignment:
Q  88 gaattttaaaataaggggaccaattttacaaaatggtgaaaatggggg 135  Q
    ||||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  21398 gaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggg 21445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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