View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_23 (Length: 246)
Name: NF6986_low_23
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_23 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0599 (2 HSPs) |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 12634747 - 12634508
Alignment:
| Q |
7 |
aatatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaatgtgaattcacttactaacaaatgaaatt |
106 |
Q |
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| T |
12634747 |
aatatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaatgtgaattcacttactaacaaatgaaatt |
12634648 |
T |
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| Q |
107 |
actcaattctgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgg |
206 |
Q |
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| T |
12634647 |
actcaattctgataggatgccgtacatgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattataatgaatgg |
12634548 |
T |
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| Q |
207 |
gaagaagaaatccaaaggtaagagtaataaccacataaca |
246 |
Q |
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| T |
12634547 |
gaagaagaaatccaaaggtaagagtaataaccacataaca |
12634508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 31151524 - 31151397
Alignment:
| Q |
116 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
215 |
Q |
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| T |
31151524 |
tgataggatgccgtacgtgaacaatgatgtttatcttgagcttgcaaagttagattacaactattgtcaagcaatgcattatgatgaatggga---agaa |
31151428 |
T |
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| Q |
216 |
atccaaaggtaagagtaataaccacataaca |
246 |
Q |
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| T |
31151427 |
atccaaaggtaagaataaaaaccacataaca |
31151397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 31151726 - 31151651
Alignment:
| Q |
7 |
aatatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaatgtga |
82 |
Q |
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| T |
31151726 |
aatatggtggcgaaaatgatgtttggattggtaagaccctttacaggtaagaatcttaattttacattgaatgtga |
31151651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 3044 - 3168
Alignment:
| Q |
116 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
215 |
Q |
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| T |
3044 |
tgataggatgccgtacatgaccaatgatgtttaacttgagcttgcaaagttggattacaacaattgtcaagcaatgcattatgatgaatggaaagaagaa |
3143 |
T |
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| Q |
216 |
atccaaaggtaagagtaataaccac |
240 |
Q |
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| T |
3144 |
atccaaaggtaagggtagtaaccac |
3168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 2847 - 2912
Alignment:
| Q |
12 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaa |
77 |
Q |
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| T |
2847 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaa |
2912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 11555 - 11431
Alignment:
| Q |
116 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
215 |
Q |
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| T |
11555 |
tgataggatgccgtacatgaccaatgatgtttatcttgagcttgcaaagttggattacaacaattgtcaagcaatgcattatgatgaatggaaagaagaa |
11456 |
T |
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| Q |
216 |
atccaaaggtaagagtaataaccac |
240 |
Q |
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| T |
11455 |
atccaaaggtaagggtagtaaccac |
11431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 11752 - 11687
Alignment:
| Q |
12 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaa |
77 |
Q |
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| T |
11752 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaa |
11687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 11911350 - 11911474
Alignment:
| Q |
116 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
215 |
Q |
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| T |
11911350 |
tgataggatgccgtacatggccaatgatgtttaccttgagcttgcaaagttggattacaacaattgtcaagcaatgcattatgatgaatggaaagaagaa |
11911449 |
T |
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| Q |
216 |
atccaaaggtaagagtaataaccac |
240 |
Q |
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| T |
11911450 |
atccaaaggtaagggtagtaaccac |
11911474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 11911153 - 11911218
Alignment:
| Q |
12 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaa |
77 |
Q |
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| T |
11911153 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaa |
11911218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 37960068 - 37960188
Alignment:
| Q |
116 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
215 |
Q |
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||||||||||||||| |||||||||||| |||| || |||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
37960068 |
tgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggattacaacaattgtcaagcaatgcattatgatgaatgg---aaagaa |
37960164 |
T |
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| Q |
216 |
atccaaaggtaagagtaataacca |
239 |
Q |
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|| || |||||||||||||||||| |
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| T |
37960165 |
atacacaggtaagagtaataacca |
37960188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 37959868 - 37959937
Alignment:
| Q |
9 |
tatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaat |
78 |
Q |
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| T |
37959868 |
tatggtggtgaaaatgatgtttggattggcaagaccctttataggtaagaatcttaattttacattgaat |
37959937 |
T |
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