View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_24 (Length: 241)
Name: NF6986_low_24
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_24 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 12633850 - 12634072
Alignment:
| Q |
19 |
attttcctggttctgatgcgtaaacatttggaggccaaggtgatcaagggttgtcagcaaaattcccatgagtttctcctctctcttgttcttgtctaac |
118 |
Q |
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|||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12633850 |
attttcctagttttgatgcataaacatttggaggccaaggtaatcaagggttgtcagcaaaattcccatgagtttctcctctctcttgttcttgtctaac |
12633949 |
T |
|
| Q |
119 |
cccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaatttaatgtctacaaagagctattaatcagtgttcaaatata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12633950 |
cccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaatttaatgtctacaaagaactattaatcagtgttcaaatata |
12634049 |
T |
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| Q |
219 |
aaatattattactagatatgccc |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
12634050 |
aaatattattactagatatgccc |
12634072 |
T |
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Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 28050315 - 28050157
Alignment:
| Q |
82 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
181 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
28050315 |
tcccatgagtttttcctctctcttgttctcgtctaaccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagtgatgaaattta |
28050216 |
T |
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| Q |
182 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcc |
240 |
Q |
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| T |
28050215 |
acgtctacagagagctattaaccaatgttcaaatataaaatattattactagatatgcc |
28050157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 19852009 - 19851851
Alignment:
| Q |
82 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
181 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
19852009 |
tcccatgagtttttcctctctcttgttctcgtctaaccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagtgatgaaattta |
19851910 |
T |
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| Q |
182 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcc |
240 |
Q |
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| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
19851909 |
acgtctacagagagctattaaccaatgttcaaatataaaatattattactagatatgcc |
19851851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 9570 - 9412
Alignment:
| Q |
82 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
181 |
Q |
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|||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
9570 |
tcccatgagtttttcctctctcttgttctcgtctagccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagtgatgaaattta |
9471 |
T |
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| Q |
182 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcc |
240 |
Q |
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| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
9470 |
acgtctacagagagctattaaccaatgttcaaatataaaatattattactagatatgcc |
9412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 17231593 - 17231436
Alignment:
| Q |
82 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
181 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||| |
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| T |
17231593 |
tcccatgagtttttcctctctcttgttctcgtctaaccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagcgatgaaattta |
17231494 |
T |
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| Q |
182 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgc |
239 |
Q |
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| ||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
17231493 |
acgtcaacagagagctattaaccaatgttcaaatataaaatattattactagatatgc |
17231436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 37960795 - 37960681
Alignment:
| Q |
19 |
attttcctggttctgatgcgtaaacatttggaggccaaggtgatcaagggttgtcagcaaaattcccatgagtttctcctctctcttgttcttgtctaac |
118 |
Q |
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||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
37960795 |
attttcctggttctgattcctaaacatttggaggtcaaggtcatcaagggttgtcagcaaaatccccatgagtttctcctctctcttgttcttgtctatc |
37960696 |
T |
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| Q |
119 |
cccctgcaacaaatt |
133 |
Q |
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|||||||||||||| |
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| T |
37960695 |
accctgcaacaaatt |
37960681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 37960662 - 37960626
Alignment:
| Q |
144 |
atttaaaacacattttgttgcatcagtggtgaaattt |
180 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
37960662 |
atttaaaacacattttgttgcatcagtggttaaattt |
37960626 |
T |
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