View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_25 (Length: 240)
Name: NF6986_low_25
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_25 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 45394393 - 45394611
Alignment:
| Q |
22 |
gaaatgatagattaaaatggtatcatggattgccaggtgaagatagattaaaatatcgataattgccagcaaagtaatttactatttgatacactcttct |
121 |
Q |
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| T |
45394393 |
gaaatgatagattaaaatggtatcatggattgccaggtgaagatagattaaaatatcgataattgccagcaaagtaatttactatttgatacactcttct |
45394492 |
T |
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| Q |
122 |
caacacggattggactcttcttaagtgaacaactaagtgtaacatgagtaatataaccgttgatgaacaaattaacggttgatattatatgcacatgcag |
221 |
Q |
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| T |
45394493 |
caacacggatttgactcttcttaagtgaacaactaagtgtaacatgagtaatataaccgttgatgaacaaattaacagttgatattatatgcacatgcag |
45394592 |
T |
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| Q |
222 |
aacaaatcatgactgtgtt |
240 |
Q |
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| T |
45394593 |
aacaaatcatgactgtgtt |
45394611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 42947918 - 42947852
Alignment:
| Q |
167 |
gagtaatat-aaccgttgatgaacaaattaacggttgatattatatgcacatgcagaacaaatcatg |
232 |
Q |
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| T |
42947918 |
gagtaatatcaaccgttgataaacaaatcaatggttgatattatatgcaaatgtaaaacaaatcatg |
42947852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 12387870 - 12387911
Alignment:
| Q |
179 |
cgttgatgaacaaattaacggttgatattatatgcacatgca |
220 |
Q |
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| T |
12387870 |
cgttgataaacaaatcaacggtttatattatatgcacatgca |
12387911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 11633131 - 11633082
Alignment:
| Q |
179 |
cgttgatgaacaaattaacggttgatattatatgcacatgcagaacaaat |
228 |
Q |
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| T |
11633131 |
cgttgatgaacaaatcaatggttgatattatatgtacatgcataacaaat |
11633082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 42196181 - 42196136
Alignment:
| Q |
187 |
aacaaattaacggttgatattatatgcacatgcagaacaaatcatg |
232 |
Q |
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| T |
42196181 |
aacaaattaattgttgatattatattcacatgcataacaaatcatg |
42196136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 26274008 - 26274064
Alignment:
| Q |
176 |
aaccgttgatgaacaaattaacggttgatattatatgcacatgcagaacaaatcatg |
232 |
Q |
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| T |
26274008 |
aaccgttgataaacaaaccaatggttaatattatatgcgcatgcataacaaatcatg |
26274064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 49361668 - 49361627
Alignment:
| Q |
187 |
aacaaattaacggttgatattatatgcacatgcagaacaaat |
228 |
Q |
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| T |
49361668 |
aacaaattaacggttgatattatatgcatatgcataacaaat |
49361627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 1550481 - 1550449
Alignment:
| Q |
198 |
ggttgatattatatgcacatgcagaacaaatca |
230 |
Q |
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| T |
1550481 |
ggttgatattatatgcacatgcataacaaatca |
1550449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 26979594 - 26979541
Alignment:
| Q |
180 |
gttgatgaacaaattaacggttgatattatatgcacatgcagaacaaatcatga |
233 |
Q |
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| T |
26979594 |
gttgacgaacaaatcaatggttgatattatatgtacatgcataacaaatcatga |
26979541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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