View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6986_low_27 (Length: 235)

Name: NF6986_low_27
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6986_low_27
NF6986_low_27
[»] chr1 (6 HSPs)
chr1 (18-111)||(20480042-20480136)
chr1 (18-111)||(13672994-13673089)
chr1 (18-111)||(20370913-20371008)
chr1 (174-218)||(20480670-20480714)
chr1 (173-218)||(13673115-13673160)
chr1 (173-218)||(20371410-20371455)
[»] scaffold0069 (2 HSPs)
scaffold0069 (18-111)||(49948-50043)
scaffold0069 (173-218)||(50564-50609)
[»] scaffold0006 (4 HSPs)
scaffold0006 (18-111)||(170608-170703)
scaffold0006 (18-111)||(208390-208485)
scaffold0006 (173-218)||(208511-208556)
scaffold0006 (173-218)||(170729-170774)
[»] scaffold0460 (2 HSPs)
scaffold0460 (18-111)||(203-298)
scaffold0460 (173-218)||(820-865)
[»] scaffold0012 (2 HSPs)
scaffold0012 (18-111)||(118269-118364)
scaffold0012 (173-218)||(118390-118435)
[»] chr7 (2 HSPs)
chr7 (20-86)||(33323519-33323585)
chr7 (24-72)||(17270613-17270661)
[»] chr4 (2 HSPs)
chr4 (20-68)||(48350773-48350821)
chr4 (32-86)||(23977202-23977256)
[»] chr5 (6 HSPs)
chr5 (20-67)||(38384477-38384524)
chr5 (20-69)||(15212406-15212455)
chr5 (20-69)||(38402218-38402267)
chr5 (20-75)||(31212054-31212109)
chr5 (23-62)||(38404596-38404635)
chr5 (20-71)||(42778710-42778761)
[»] chr2 (1 HSPs)
chr2 (20-72)||(40299952-40300004)
[»] scaffold0071 (1 HSPs)
scaffold0071 (20-72)||(13063-13115)
[»] chr3 (1 HSPs)
chr3 (20-72)||(15449074-15449126)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 20480042 - 20480136
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatata-cgataaaaattgaactttttctcactatatca 111  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20480042 acatttaaatgtttattttgtataggtccaatttaaacattctttattgttggagaaatataccgataaaaattgaactttttctcactatatca 20480136  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 13672994 - 13673089
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatatac-gataaaaattgaac-tttttctcactatatca 111  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  13672994 acatttaaatgtttattttgtataggtccaatttaaacattctttattgttggagaaatatactgataaaaattgaacttttttctcactatatca 13673089  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 20370913 - 20371008
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatata-cgataaaaattgaac-tttttctcactatatca 111  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  20370913 acatttaaatgtttattttgtataggtccaatttaaacattctttattgttggagaaatataccgataaaaattgaacttttttctcactatatca 20371008  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 20480670 - 20480714
Alignment:
Q  174 aataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||    
T  20480670 aataattttgattctacaagagatgaaaaaattgatttatatttt 20480714  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 13673115 - 13673160
Alignment:
Q  173 gaataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||    
T  13673115 gaataattttgattttacaagagatgaaaaaattgatttatatttt 13673160  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 20371410 - 20371455
Alignment:
Q  173 gaataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  20371410 gaataattttgattctacaagagatgaaaaaattgatttttatttt 20371455  T

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Target: scaffold0069 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 49948 - 50043
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatata-cgataaaaattgaac-tttttctcactatatca 111  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  49948 acatttaaatgtttattttgtataggtccaatttaaacattctttattgttggagaaatataccgataaaaattgaacttttttctcactatatca 50043  T

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Target: scaffold0069; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 50564 - 50609
Alignment:
Q  173 gaataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  50564 gaataattttgattctacaagagatgaaaaaattgatttttatttt 50609  T

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Target: scaffold0006 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 170608 - 170703
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatatac-gataaaaattgaac-tttttctcactatatca 111  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  170608 acatttaaatgtttattttgtataggtccaatttaaacattctttattgttggagaaatatactgataaaaattgaacttttttctcactatatca 170703  T

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Target: scaffold0006; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 208390 - 208485
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatata-cgataaaaattgaac-tttttctcactatatca 111  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||    
T  208390 acatttaaatgtttattttgtataggtccaatttaaacattctttattgttggagaaatataccgttaaaaattgaacttttttctcactatatca 208485  T

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Target: scaffold0006; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 208511 - 208556
Alignment:
Q  173 gaataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  208511 gaataatttagattccacaagagatgaaaaaattgatttatatttt 208556  T

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Target: scaffold0006; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 170729 - 170774
Alignment:
Q  173 gaataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||    
T  170729 gaataattttgattttacaagagatgaaaaaattgatttatatttt 170774  T

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Target: scaffold0460 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 203 - 298
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatata-cgataaaaattgaac-tttttctcactatatca 111  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  203 acatttaaatgtttattttgtataggtccaatttaaacattctttattgttggagaaatataccgataaaaattgaacttttttttcactatatca 298  T

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Target: scaffold0460; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 820 - 865
Alignment:
Q  173 gaataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||||    
T  820 gaataattttgattctacaagagatgaaaaaattgattcatatttt 865  T

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Target: scaffold0012 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 118269 - 118364
Alignment:
Q  18 acatttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatatac-gataaaaattgaac-tttttctcactatatca 111  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  118269 acatttaaatatttattttgtataggtccaatttaaacattctttattgttggagaaatatacttataaaaattgaacttttttctcactatatca 118364  T

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Target: scaffold0012; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 118390 - 118435
Alignment:
Q  173 gaataatttagattctacaagagatgaaaaatttgatttatatttt 218  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  118390 gaataatttagattcaacaagagatgaaaaaattgatttatatttt 118435  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 33323519 - 33323585
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaatatacgataaa 86  Q
    ||||||||||||||||| || | || |||||||||||||||||||||||||||||| ||| ||||||    
T  33323519 atttaaatgtttattttgtacatgtccaatttaaacattctttattgttggagaaagatatgataaa 33323585  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 17270613 - 17270661
Alignment:
Q  24 aaatgtttattttttataggttcaatttaaacattctttattgttggag 72  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  17270613 aaatgtttattttgtataggttcaatttaaacattctttattgctggag 17270661  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 48350821 - 48350773
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgtt 68  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  48350821 atttaaatgtttattttgtataggttcaatttaaacattgtttattgtt 48350773  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 23977202 - 23977256
Alignment:
Q  32 attttttataggttcaatttaaacattctttattgttggagaaatatacgataaa 86  Q
    ||||| |||||||  ||||||| ||||||||||||||||||||  ||||||||||    
T  23977202 attttgtataggtctaatttaatcattctttattgttggagaacaatacgataaa 23977256  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 38384477 - 38384524
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgt 67  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  38384477 atttaaatgtttattttgtataggtccaatttaaaccttctttattgt 38384524  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 15212455 - 15212406
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttg 69  Q
    ||||||||||| ||||| ||||||| ||||||||||||| ||||||||||    
T  15212455 atttaaatgttaattttgtataggtccaatttaaacattttttattgttg 15212406  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 38402218 - 38402267
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttg 69  Q
    |||||| |||||||||| ||||||| |||||||||| |||||||||||||    
T  38402218 atttaattgtttattttgtataggtccaatttaaaccttctttattgttg 38402267  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 31212054 - 31212109
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttggagaaa 75  Q
    ||||||||||||  ||| | ||||| ||||||||||||||||||||||| ||||||    
T  31212054 atttaaatgtttgctttgtttaggtccaatttaaacattctttattgttagagaaa 31212109  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 38404596 - 38404635
Alignment:
Q  23 taaatgtttattttttataggttcaatttaaacattcttt 62  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  38404596 taaatatttattttgtataggttcaatttaaacattcttt 38404635  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 42778710 - 42778761
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttgga 71  Q
    |||||||| |||||||| |||| || |||||||||||||| |||||||||||    
T  42778710 atttaaatatttattttgtatatgtccaatttaaacattcattattgttgga 42778761  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 40299952 - 40300004
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttggag 72  Q
    ||||||||| ||| ||| ||||||| |||| ||||||||||||||||||||||    
T  40299952 atttaaatgattaatttgtataggtccaatctaaacattctttattgttggag 40300004  T

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Target: scaffold0071 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 13115 - 13063
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttggag 72  Q
    ||||||||||||||||| |||||||   ||||||||||||||| || ||||||    
T  13115 atttaaatgtttattttgtataggtcagatttaaacattctttgttattggag 13063  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 15449074 - 15449126
Alignment:
Q  20 atttaaatgtttattttttataggttcaatttaaacattctttattgttggag 72  Q
    ||||||||||||||||| |||||||   ||||||||||||||| || ||||||    
T  15449074 atttaaatgtttattttgtataggtcagatttaaacattctttgttattggag 15449126  T

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