View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6986_low_29 (Length: 205)

Name: NF6986_low_29
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6986_low_29
NF6986_low_29
[»] chr5 (12 HSPs)
chr5 (20-186)||(16403267-16403433)
chr5 (20-186)||(15453373-15453539)
chr5 (89-186)||(15357346-15357443)
chr5 (82-183)||(15347070-15347171)
chr5 (53-186)||(16396708-16396841)
chr5 (82-186)||(15083018-15083122)
chr5 (98-186)||(15331261-15331349)
chr5 (128-186)||(15335743-15335801)
chr5 (89-186)||(15421656-15421753)
chr5 (76-186)||(15429532-15429642)
chr5 (82-186)||(17927660-17927764)
chr5 (142-186)||(16414122-16414166)
[»] chr3 (1 HSPs)
chr3 (82-183)||(8187170-8187271)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 16403267 - 16403433
Alignment:
Q  20 tcagacacagtaggcaagtcattgttataagtgatgcaacaaacttctcttgtaactgactcagcaagttcatgaacaagatcatgcatcttaaatgatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16403267 tcagacacagtaggcaagtcattgttataagtgatgcaacaaacttctcttgtaactgactcagcaagttcatgaacaagatcatgcatcttaaatgatg 16403366  T
Q  120 taatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattccacac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16403367 taatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattccacac 16403433  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 15453539 - 15453373
Alignment:
Q  20 tcagacacagtaggcaagtcattgttataagtgatgcaacaaacttctcttgtaactgactcagcaagttcatgaacaagatcatgcatcttaaatgatg 119  Q
    ||||||| ||||||||||||||||| ||  || |||||||| || ||||||| ||||||||||||||| |||||||||| |||||||||||| |||  ||    
T  15453539 tcagacatagtaggcaagtcattgtaatctgtaatgcaacagacctctcttgcaactgactcagcaagatcatgaacaaaatcatgcatcttgaatactg 15453440  T
Q  120 taatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattccacac 186  Q
     |  ||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||| |||||    
T  15453439 cagattgaccaaattcacctgtctcggtatgttggaaaagtgatctccaatataattcattacacac 15453373  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 15357346 - 15357443
Alignment:
Q  89 tcatgaacaagatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattccacac 186  Q
    ||||||||||||||||||||||| || |||  |||||  |||||||||| |||||  |||||||||||||||||||| ||||||||||||||||||||    
T  15357346 tcatgaacaagatcatgcatcttgaaagatacaatttttccaaattcatttgtcttggtatcttggaaaaatgatctacaatataattcattccacac 15357443  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 15347070 - 15347171
Alignment:
Q  82 agcaagttcatgaacaagatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattc 181  Q
    |||||| ||||||||||||||||||||| | ||  ||  |||||| ||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  15347070 agcaagatcatgaacaagatcatgcatcgtgaaatatacaatttgtccaaaatcatctgtctgagtatcttgaaaaaatgatctacaatataattcattc 15347169  T
Q  182 ca 183  Q
    ||    
T  15347170 ca 15347171  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 16396708 - 16396841
Alignment:
Q  53 atgcaacaaacttctcttgtaactgactcagcaagttcatgaacaagatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatctt 152  Q
    |||||||| || |||  |||||| ||| ||||||| ||||||||||||||||||||||| |||  ||||||||| |||||| |  |  |||| |||| ||    
T  16396708 atgcaacatacatcttgtgtaacagacccagcaagatcatgaacaagatcatgcatcttgaatattgtaatttggccaaatcccacattctctgtatttt 16396807  T
Q  153 ggaaaaatgatctccaatataattcattccacac 186  Q
     ||||||||| |||||||||||||||||||||||    
T  16396808 cgaaaaatgacctccaatataattcattccacac 16396841  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 15083018 - 15083122
Alignment:
Q  82 agcaagttcatgaacaagatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattc 181  Q
    |||||| || ||||||||||| |||||||| ||   ||||||||  |||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  15083018 agcaagatcgtgaacaagatcgtgcatcttgaaacttgtaattttgccaaatacatctgtctcaatatcttgaaaaaatgatctacaatataattcattc 15083117  T
Q  182 cacac 186  Q
    |||||    
T  15083118 cacac 15083122  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 15331261 - 15331349
Alignment:
Q  98 agatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattccacac 186  Q
    |||||||||||||| ||   ||||||||  ||||||  |||||||||| |||||||||||||||||||| | |||||||||||||||||    
T  15331261 agatcatgcatcttgaaacttgtaattttgccaaatatatctgtctcaatatcttggaaaaatgatctcaagtataattcattccacac 15331349  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 15335743 - 15335801
Alignment:
Q  128 ccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattccacac 186  Q
    ||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  15335743 ccaaattgatctatctcaatatcttgaaaaaatgatctccaatataattcattccacac 15335801  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 15421753 - 15421656
Alignment:
Q  89 tcatgaacaagatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattccacac 186  Q
    |||||||||||||| |||||||| ||   | |||||| ||||||| ||||| |||||  |||||| ||||||||||||||||| | ||||||||||||    
T  15421753 tcatgaacaagatcgtgcatcttgaaacttataatttcaccaaatacatctctctcaaaatcttgaaaaaatgatctccaatacagttcattccacac 15421656  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 15429642 - 15429532
Alignment:
Q  76 tgactcagcaagttcatgaacaagatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataat 175  Q
    ||||| ||| || |||||||||||||| |||||||| ||   | ||||||  |||||| ||||| |||||  |||||| ||||| ||||||||||||| |    
T  15429642 tgactgagcgagatcatgaacaagatcgtgcatcttgaaacttataatttcgccaaatacatctctctcaaaatcttgaaaaaaggatctccaatatatt 15429543  T
Q  176 tcattccacac 186  Q
    |||||||||||    
T  15429542 tcattccacac 15429532  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 17927660 - 17927764
Alignment:
Q  82 agcaagttcatgaacaagatcatgcatctt-aaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcatt 180  Q
    |||||| |||||||||||||||||||| || ||||| |||||    ||| |||| |||||| | |  |||||| |||||||| |||||||||||||||||    
T  17927660 agcaagatcatgaacaagatcatgcattttgaaatg-tgtaaccatacctaatttatctgtttgaacatcttgaaaaaatgaactccaatataattcatt 17927758  T
Q  181 ccacac 186  Q
    ||||||    
T  17927759 ccacac 17927764  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 16414122 - 16414166
Alignment:
Q  142 ctcagtatcttggaaaaatgatctccaatataattcattccacac 186  Q
    |||| ||||||| |||||||||||||||||||| |||||||||||    
T  16414122 ctcaatatcttgaaaaaatgatctccaatataactcattccacac 16414166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 8187170 - 8187271
Alignment:
Q  82 agcaagttcatgaacaagatcatgcatcttaaatgatgtaatttgaccaaattcatctgtctcagtatcttggaaaaatgatctccaatataattcattc 181  Q
    |||||| ||||| ||||||||||||||||| ||  || ||||||  |||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  8187170 agcaagatcatgtacaagatcatgcatcttgaaatatataatttttccaaattcatctgtcataatatcttggaaaaatgatctccaatataattcattc 8187269  T
Q  182 ca 183  Q
    ||    
T  8187270 ca 8187271  T

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