View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6986_low_31 (Length: 201)
Name: NF6986_low_31
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 10344564 - 10344738
Alignment:
| Q |
9 |
gaagaaaatgtatttgagataagggtcggaaaatgctttacctaaatttttgaaagtttacaaagttcagtttgatttatgtgtattgttgaggttcacc |
108 |
Q |
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| T |
10344564 |
gaagaaaatgtatttgagataagggtcggaaaatgttttactgaaagttttgaaagtttacaaagttcagtttgatttatgtgtattgttgaggttcacc |
10344663 |
T |
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| Q |
109 |
tgggataggtagaaaactttaagaattggtgtttacttgagttgttgtgtgtattaggttacttaactcgaggag |
183 |
Q |
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| T |
10344664 |
tgggataggtagaaaactttaagaactggtgtttacttgagttgtcgtgtgtattaggttacttaactcgaggag |
10344738 |
T |
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Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 10346527 - 10346693
Alignment:
| Q |
9 |
gaagaaaatgtatttgagataagggtcggaaaatgctttacctaaatttttgaaagtttacaaagttcagtttgatttatgtgtattgttgaggttcacc |
108 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
10346527 |
gaagaaaatgtatttgagataagggtcaaaaaatgttttacctaaaattttaaaagtttacaaagatcagtttgatttatgtgtattgttgagcttcact |
10346626 |
T |
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| Q |
109 |
tgggataggtag-aaaactttaagaattggtgtttacttgagttgttgtgtgtattaggttacttaa |
174 |
Q |
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| T |
10346627 |
tgggataggtagaaaaaccttaagaactagtgtttacttgagttgttgtgtgtattagcatacttaa |
10346693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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