View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6986_low_7 (Length: 528)
Name: NF6986_low_7
Description: NF6986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6986_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 139 - 511
Target Start/End: Original strand, 751377 - 751730
Alignment:
| Q |
139 |
cacatcacatggattaacaaaattgagaataaaatcaggggtgatttgggaaacaaaattctcttgatcttttataaaaaatatcaaacatacaaacata |
238 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
751377 |
cacatcacatggattaaaaaaattgagaataaaatcaggggtgatttgggaaacaaaattctcttgatcttttataaaatatg----------aaacata |
751466 |
T |
|
| Q |
239 |
catgataaagagagatagaagaagaaaatagtaagtaacctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataatacatgaaat |
338 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751467 |
catgataaagagagatag-------------taagtaacctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataatacatgaaat |
751553 |
T |
|
| Q |
339 |
tatgacgatcggagtaatctttgcctcaaattcacctccgccactcgtggcgaagcctccaccagccatggttaatttgcctaatagt------atgcaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
751554 |
tatgacgatcggagtaatctttgcctcaaattcacctccgccactcgtggcgaagcctccaccagccatggttaatttgcctaaaagtatgcaaatgcaa |
751653 |
T |
|
| Q |
433 |
tgaagaaaataaataaataagagagaagaaatatttatgtatgagttattatgagatgaaagtattgagagtgttgagt |
511 |
Q |
| |
|
||| || | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
751654 |
tgaggaga--aaataaataagagagaagaaatatgtatgtatgagttattatgagatgaaagtatagagagtgttgagt |
751730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 751189 - 751320
Alignment:
| Q |
13 |
aatatattaatataattttcatattaatttgttgttttaatttaagtcaaaacaaaattaattgg-nnnnnnnnggataagaatgaaagaaattagtagt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
751189 |
aatatattaatataattttcatattaatttgttgttttaatttaagtcaaaacaaaattaattggtttttttttggataagaaagaaagaaattagtagt |
751288 |
T |
|
| Q |
112 |
tgagagatttagggaactgaactgactcacat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
751289 |
tgagagatttagggaactgaactgactcacat |
751320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 47207597 - 47207502
Alignment:
| Q |
276 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataatacatgaaattatgacgatcggagtaatctttgcctcaaattc |
371 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||| ||||| |||||||| || |||||||| || | ||| ||||| ||||||||||||||||| |
|
|
| T |
47207597 |
acctgaaactccaacatcgtaaccaaacataagacctccggtggcagccattatgcatgaaatgataatgataggagttatctttgcctcaaattc |
47207502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 47196740 - 47196690
Alignment:
| Q |
276 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccat |
326 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
47196740 |
acctgaaataccaacatcataaccaaacataagaccaccagtagcagccat |
47196690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 47183852 - 47183799
Alignment:
| Q |
276 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataat |
329 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
47183852 |
acctgaaataccaatatcataaccaaacataagaccaccgaaagcagccataat |
47183799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University