View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6987_high_1 (Length: 538)
Name: NF6987_high_1
Description: NF6987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6987_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 146 - 382
Target Start/End: Original strand, 33994413 - 33994652
Alignment:
| Q |
146 |
tcccatagtgaccggtactttatttttgcatgcaaagctatatttgaaatgtcaagccttttctattttagtttctaatcannnnnnngtaatcgaatga |
245 |
Q |
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| T |
33994413 |
tcccatagtgactggtactttattta-gcatgcaaagctatatttggaatgtcaagccttttctattttagtttctaatcatttttttgtaatcgaatga |
33994511 |
T |
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| Q |
246 |
tgtagtcactgtattatactc----cggtcacatactatatcattttctctaagtgtaaagataacaactaaatgaaatattagttactactttggacta |
341 |
Q |
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| T |
33994512 |
tgtagtcactatataatatccttttcggtcacatactatatcattttctctaagtgtaaagataacaactaaatgaaatattagttactactttggactg |
33994611 |
T |
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| Q |
342 |
gacctattattaatgttattatttaaacgttgtcgcgtgga |
382 |
Q |
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| T |
33994612 |
gacctattattaatgttattatttaaacattatcgcgtgga |
33994652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 33994245 - 33994380
Alignment:
| Q |
12 |
tggtcgtactgactgagctagctgggaaagtaaagctgtagtattatacatgttggacttagttgtataagcatatgagcaacaatagagttatcactag |
111 |
Q |
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| T |
33994245 |
tggtcgtactaactgagctagctgggaaagtaaagcagtagtattatatatgttggacttagtagtataagcatatgagcaacaatagagttatcactag |
33994344 |
T |
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| Q |
112 |
gtcccctcnnnnnnncaaaatagagttgtcaatatc |
147 |
Q |
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| T |
33994345 |
gtcccctcaaaaaaacaaaatagagttgtcactatc |
33994380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 33994658 - 33994704
Alignment:
| Q |
475 |
aaggcagtcaaaactcagaatta-gcataatatacattgcccatttt |
520 |
Q |
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| T |
33994658 |
aaggcagtcaaaactcagaattaggtataatatacattgcccatttt |
33994704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 10592727 - 10592776
Alignment:
| Q |
265 |
tccggtcacatactatatcattttctctaagtgtaaagataacaactaaa |
314 |
Q |
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| T |
10592727 |
tccggtcacatactatatcattttctctaagtgtaaagataacaactaaa |
10592776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 10592836 - 10592878
Alignment:
| Q |
413 |
tcaattaaacaacattacccctgcatcagcttccacgttctaa |
455 |
Q |
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| T |
10592836 |
tcaattcaacaacattacccctgcatcagcttccacattctaa |
10592878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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