View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6987_low_1 (Length: 555)
Name: NF6987_low_1
Description: NF6987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6987_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Complemental strand, 2795992 - 2795473
Alignment:
| Q |
14 |
atggacatcatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacg |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795992 |
atggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacg |
2795893 |
T |
|
| Q |
114 |
gtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795892 |
gtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaat |
2795793 |
T |
|
| Q |
214 |
ttataacatcaaaattccgatttgcagaagttttatccatattagaaccatattttttaaaattttgtattctgatattctccgttacctcttatgaacg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795792 |
ttataacatcaaaattccgatttgcagaagttttatccatattagaaccatatttttttaaattttgtattctgatattctccgttacctcttatgaacg |
2795693 |
T |
|
| Q |
314 |
tcaacaaattcatctgtctcgtccacaatttctacctgcatcgagaagcaattacattcagttttaaacgtgaaaaaatataaacaattgggggatgcac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2795692 |
tcaacaaattcatctgtctcgtccacaatttctacctgcatcgagaagcaattacattcagttttatacgtgaaaaaatataaacaattgggggatgcac |
2795593 |
T |
|
| Q |
414 |
atatctaagacaaaaatttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcaccattttcaacattttcggaagaagga |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
2795592 |
atatctaagacaaaaatttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcagcatgttcaacattttcg---gaagga |
2795496 |
T |
|
| Q |
514 |
gcgtttaactgcgaaccagtttg |
536 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2795495 |
gcgtttaactgcgaaccagtttg |
2795473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 50 - 508
Target Start/End: Complemental strand, 48671084 - 48670608
Alignment:
| Q |
50 |
agattgatttcacttagaaactatagcagagaaacaaatattaaa-tcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaac |
148 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | | |||| |||| ||||||| |||| ||||| || | ||| | |
|
|
| T |
48671084 |
agattgatttcacttggaaactatagcagagaaacaaatattaaaatcataaaagatgcgtaacgttaaaccacttaccgctcccttttggccagtcatc |
48670985 |
T |
|
| Q |
149 |
cttcggattgatggagctcgtgccattggggaagcggt---------tgttacaggtattctgcagaataaaatt--tataacatcaaaattccgatttg |
237 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| | || ||| ||||||||||||||| |||| ||||| ||||||||| ||||| |
|
|
| T |
48670984 |
cttcggactgatggagctcgtgccattgaggaagcagcggcagctgctgcaacacgtattctgcagaatacaattgatataaagtcaaaattcagattta |
48670885 |
T |
|
| Q |
238 |
cagaagttttatccatattagaaccata-ttttttaaaattttgtattctgatattctccgttacctcttatgaacgtcaacaaattcatctgtctcgtc |
336 |
Q |
| |
|
|| |||||| | |||| || | | || ||||||| || | || ||| || |||| |||||| ||||||||||||||| ||||||||||||| || |
|
|
| T |
48670884 |
aagcagttttgttcataccagcagcttaattttttattatgatatactctc-tagtctctattaccttttatgaacgtcaacatattcatctgtctcatc |
48670786 |
T |
|
| Q |
337 |
cacaatttctacctgca-tcgagaagcaattacattcagttttaaacgtg---aaaaaatataaacaattgggggatgcacatatct---aagacaaaaa |
429 |
Q |
| |
|
||||||||| |||||| || |||||||||| | ||| ||| |||||| |||||| |||| ||||| ||||||||||||| | |||||||||| |
|
|
| T |
48670785 |
tacaatttcttcctgcactcaagaagcaattcaaatcaattt--aacgtgcggaaaaaaattaaaaaattgtgggatgcacatatttcggaagacaaaaa |
48670688 |
T |
|
| Q |
430 |
-tttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcaccattttcaacattttcggaag |
508 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
48670687 |
atttacttgtagaagttcttcaaatacatcttccaaagtgataataccaatcacttcgccatcttcaaaattttcggaag |
48670608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 16391468 - 16391398
Alignment:
| Q |
420 |
aagacaaaaatttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcaccat |
490 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16391468 |
aagacagaaatttacttgcagaagttcttcaaatacatcttccaaagtgataataccaatcacttcaccat |
16391398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 16391577 - 16391495
Alignment:
| Q |
298 |
ttacctcttatgaacgtcaacaaattcatctgtctcgtccacaatttctacctgcat-cgagaagcaattacattcagtttta |
379 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||| |||||||||||| ||||||| | ||| | |||| |||||||||||| |
|
|
| T |
16391577 |
ttacctgttatgaacgtcaacatattcatccgtctcatccacaatttcttcctgcatgcaagaggtaatttcattcagtttta |
16391495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 16391722 - 16391689
Alignment:
| Q |
150 |
ttcggattgatggagctcgtgccattggggaagc |
183 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
16391722 |
ttcggattgatggagctcgtgccattgaggaagc |
16391689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University