View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6987_low_3 (Length: 250)

Name: NF6987_low_3
Description: NF6987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6987_low_3
NF6987_low_3
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-240)||(15376-15615)
[»] chr3 (25 HSPs)
chr3 (1-239)||(42165244-42165482)
chr3 (2-239)||(4008077-4008315)
chr3 (1-239)||(3975787-3976026)
chr3 (1-239)||(596839-597078)
chr3 (1-189)||(50216631-50216822)
chr3 (1-189)||(50963085-50963274)
chr3 (1-169)||(47073960-47074131)
chr3 (1-169)||(3501645-3501816)
chr3 (1-199)||(30255755-30255955)
chr3 (1-180)||(42756293-42756473)
chr3 (1-203)||(51807085-51807289)
chr3 (1-188)||(20917770-20917957)
chr3 (1-188)||(20926732-20926919)
chr3 (1-188)||(49196200-49196388)
chr3 (1-150)||(48563112-48563263)
chr3 (1-150)||(44229885-44230033)
chr3 (59-189)||(48888867-48888997)
chr3 (126-201)||(2647816-2647891)
chr3 (2-98)||(42806008-42806107)
chr3 (1-48)||(48889016-48889063)
chr3 (114-188)||(42807498-42807572)
chr3 (126-195)||(34048953-34049022)
chr3 (126-195)||(46402255-46402324)
chr3 (126-195)||(49140978-49141047)
chr3 (126-194)||(54389676-54389744)
[»] chr8 (21 HSPs)
chr8 (2-239)||(43211587-43211824)
chr8 (1-189)||(41249826-41250015)
chr8 (1-187)||(45064374-45064561)
chr8 (1-189)||(39938969-39939158)
chr8 (1-188)||(34822770-34822961)
chr8 (1-187)||(15036481-15036668)
chr8 (1-171)||(40077003-40077174)
chr8 (56-189)||(39601834-39601967)
chr8 (1-189)||(39846739-39846931)
chr8 (68-189)||(42485358-42485479)
chr8 (1-173)||(39252156-39252331)
chr8 (1-188)||(25864692-25864880)
chr8 (1-188)||(43188181-43188369)
chr8 (58-169)||(35026638-35026749)
chr8 (68-189)||(489449-489570)
chr8 (87-189)||(5304010-5304112)
chr8 (1-89)||(2984354-2984442)
chr8 (1-48)||(39601988-39602035)
chr8 (126-195)||(486181-486250)
chr8 (1-31)||(5303974-5304004)
chr8 (64-132)||(45127937-45128005)
[»] chr2 (14 HSPs)
chr2 (2-239)||(39947680-39947919)
chr2 (1-189)||(28468772-28468961)
chr2 (1-187)||(21998323-21998510)
chr2 (1-189)||(7185159-7185349)
chr2 (1-232)||(45428678-45428911)
chr2 (1-189)||(45137185-45137374)
chr2 (1-150)||(32956107-32956258)
chr2 (58-188)||(25964944-25965074)
chr2 (68-189)||(42505582-42505703)
chr2 (1-130)||(17420757-17420887)
chr2 (1-47)||(25965094-25965140)
chr2 (126-195)||(3937983-3938052)
chr2 (126-195)||(17424005-17424074)
chr2 (126-195)||(43982072-43982141)
[»] chr7 (17 HSPs)
chr7 (1-233)||(10517077-10517300)
chr7 (1-189)||(34738495-34738686)
chr7 (1-189)||(17835208-17835396)
chr7 (1-203)||(47776449-47776654)
chr7 (1-150)||(39460698-39460848)
chr7 (1-203)||(27453372-27453576)
chr7 (1-150)||(47672838-47672988)
chr7 (1-189)||(37340435-37340624)
chr7 (1-180)||(36977736-36977918)
chr7 (68-189)||(15074048-15074169)
chr7 (68-189)||(42507847-42507968)
chr7 (57-169)||(9494616-9494728)
chr7 (126-200)||(15070595-15070669)
chr7 (126-168)||(42504692-42504734)
chr7 (126-194)||(9367848-9367916)
chr7 (1-48)||(9494548-9494595)
chr7 (59-150)||(17741269-17741360)
[»] chr5 (15 HSPs)
chr5 (1-189)||(7757455-7757644)
chr5 (1-239)||(14442-14681)
chr5 (1-187)||(8580258-8580445)
chr5 (1-189)||(28876774-28876963)
chr5 (1-189)||(19228425-19228614)
chr5 (1-189)||(512525-512714)
chr5 (68-189)||(28241619-28241740)
chr5 (1-180)||(38968235-38968417)
chr5 (1-143)||(42942239-42942383)
chr5 (58-146)||(42537317-42537405)
chr5 (126-201)||(28880202-28880277)
chr5 (120-201)||(30708778-30708859)
chr5 (64-150)||(8702040-8702126)
chr5 (126-195)||(19037601-19037670)
chr5 (1-48)||(42537422-42537469)
[»] chr1 (17 HSPs)
chr1 (89-236)||(2425528-2425674)
chr1 (1-189)||(22524258-22524446)
chr1 (1-189)||(29622177-29622366)
chr1 (1-175)||(52802275-52802451)
chr1 (1-189)||(35258626-35258814)
chr1 (1-203)||(47502431-47502635)
chr1 (68-189)||(30890193-30890314)
chr1 (1-189)||(23275857-23276050)
chr1 (1-180)||(11183318-11183501)
chr1 (76-189)||(19924888-19925001)
chr1 (1-180)||(51320854-51321034)
chr1 (1-97)||(2425128-2425224)
chr1 (1-112)||(19527296-19527408)
chr1 (1-173)||(45825034-45825196)
chr1 (1-189)||(31783481-31783658)
chr1 (126-201)||(13636252-13636327)
chr1 (5-48)||(11196153-11196196)
[»] chr4 (23 HSPs)
chr4 (1-189)||(50274865-50275054)
chr4 (1-189)||(40358033-40358222)
chr4 (1-173)||(21022641-21022814)
chr4 (1-188)||(55407540-55407732)
chr4 (68-189)||(1308934-1309055)
chr4 (1-189)||(51683332-51683522)
chr4 (68-189)||(1089404-1089525)
chr4 (56-173)||(8109540-8109657)
chr4 (68-189)||(30726561-30726682)
chr4 (1-188)||(67724-67911)
chr4 (1-180)||(48256324-48256505)
chr4 (1-144)||(50901657-50901800)
chr4 (67-150)||(21538281-21538364)
chr4 (120-201)||(40354692-40354775)
chr4 (1-95)||(37021836-37021936)
chr4 (126-195)||(6178241-6178310)
chr4 (126-195)||(41795487-41795556)
chr4 (126-195)||(49093957-49094026)
chr4 (67-123)||(10753256-10753312)
chr4 (67-123)||(10967025-10967081)
chr4 (118-173)||(37021933-37021988)
chr4 (64-150)||(11083832-11083918)
chr4 (64-150)||(41933439-41933524)
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-187)||(7551-7738)
[»] scaffold0184 (1 HSPs)
scaffold0184 (63-203)||(18111-18251)
[»] scaffold0078 (1 HSPs)
scaffold0078 (63-203)||(54593-54733)
[»] scaffold0293 (1 HSPs)
scaffold0293 (1-173)||(481-648)
[»] scaffold0101 (2 HSPs)
scaffold0101 (68-189)||(40855-40976)
scaffold0101 (126-201)||(36664-36739)
[»] chr6 (9 HSPs)
chr6 (1-143)||(31768877-31769021)
chr6 (1-150)||(24088535-24088687)
chr6 (90-189)||(6320371-6320470)
chr6 (126-201)||(22304976-22305051)
chr6 (1-48)||(6320316-6320363)
chr6 (130-201)||(27639455-27639526)
chr6 (126-195)||(6204700-6204769)
chr6 (126-195)||(11691667-11691736)
chr6 (57-112)||(30424240-30424296)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-150)||(8374-8523)


Alignment Details
Target: scaffold0180 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15376 - 15615
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  15376 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaatttttttaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 15475  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15476 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 15575  T
Q  201 aaaatggggaagtctggttctgcattctggtttagttcat 240  Q
    |||||||||||||||| |||||  ||||||||||||||||    
T  15576 aaaatggggaagtctgcttctgtgttctggtttagttcat 15615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42165482 - 42165244
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||    
T  42165482 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaattttttttaaaaatcaacctaaacaaattaacattatgattaaaatgatgga 42165383  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42165382 cacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaagaatatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 42165283  T
Q  201 aaaatggggaagtctggttctgcattctggtttagttca 239  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  42165282 aaaatggggaagtctggttctgcgttctggtttagttca 42165244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 4008077 - 4008315
Alignment:
Q  2 aattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  4008077 aattgtcaattttaaaatcaaccctaaccacatacaaactactctaattttttttaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 4008176  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 200  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4008177 cacaacttacttgtgataatgtgcagttgatttgcttgctattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 4008276  T
Q  201 aaaatggggaagtctggttctgcattctggtttagttca 239  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  4008277 aaaatcgggaagtctggttctgcgttctggtttagttca 4008315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3976026 - 3975787
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  3976026 aaattgtcaatttttaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 3975927  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttg 199  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3975926 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttg 3975827  T
Q  200 gaaaatggggaagtctggttctgcattctggtttagttca 239  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  3975826 gaaaatggggaagtctagttctgcgttctggtttagttca 3975787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 597078 - 596839
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||| || |||||||||||||||| || |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  597078 aaattgtcaatatttaaatcaaccctaaccacatgcaaactactctaatttaaaaaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 596979  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 200  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||    
T  596978 cacaacttacttgtgataatgtgcaattgatttgcttgcaattcgtgaaaatggatttggtgaagattggagaaaaattgtgaattttgtgaagttttgg 596879  T
Q  201 aaaatggggaag-tctggttctgcattctggtttagttca 239  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  596878 aaaatggggaagttctggttctgcgttctggtttagttca 596839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 50216631 - 50216822
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna---aaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||       |   ||||||||||||||||||||| ||||||| |||||||||||    
T  50216631 aaattatcaattttaaaatcaaccctaaccacatgcaaactactctaatttaaaaataaaaaaatcaacctaaacaaatttacattatcattaaaatgat 50216730  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| || ||||||||||||    
T  50216731 tgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgtgaattttg 50216822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 50963274 - 50963085
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  50963274 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 50963175  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||||    
T  50963174 acacaacttacttgtgataatgtacacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattttg 50963085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 47073960 - 47074131
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactcta---annnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||   |        ||||||||||||||||||||||||||||| |||||||||||    
T  47073960 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctatttattttttttaaaaatcaacctaaacaaattaacattatcattaaaatgat 47074059  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattg 169  Q
    ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||   ||||||||||||||||    
T  47074060 tgacacaacttacttgtgataatgtgcggttgatttgcttgctattcgtgaaaatggatttggtgaagattg 47074131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 3501645 - 3501816
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna---aaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||           ||||||||||||||||||||||||||||  |||||||||||    
T  3501645 aaattctcaattttgaaatcaaccctaaccacatacaaactactctaatttttttttttaaaaatcaacctaaacaaattaacattaacattaaaatgat 3501744  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattg 169  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||||    
T  3501745 tgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattg 3501816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 30255755 - 30255955
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||| |||||||||||||||||||| || |||||||||||||         |||||| |||||||||||| |||| |||| |||||||||||||    
T  30255755 aaattgtcaactttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaataaacctaaacaaactaaccttatcattaaaatgattg 30255854  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaa-ttttgtgaagttt 197  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| | |||||| ||| ||||| |||||||    
T  30255855 atacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa-atgactttggtgaagattggaaagaatttgagaagttttgagaagttt 30255953  T
Q  198 tg 199  Q
    ||    
T  30255954 tg 30255955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 42756473 - 42756293
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||         |||||| |||||||||||| ||||||||| |||||||||||||    
T  42756473 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaataaacctaaacaaactaacattattattaaaatgattg 42756374  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttg 180  Q
    | |||||| |||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| | ||||||    
T  42756373 atacaactgacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa-atgactttggtgaagattggaaagaatttg 42756293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 51807289 - 51807085
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||| | |||||| || |||||||||||||         |||||| |||||||||||| | ||||||| |||||||||||||    
T  51807289 aaattgtcaattttaaaatcaatcataaccacatgcaaactactctaatttttttttaaaaataaacctaaacaaactgacattatcattaaaatgattg 51807190  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt-gtgaagtttt 198  Q
    | ||||||||||| ||||||||| |||||||||||||||||||| ||||||  |  |||||||||||||||||| || ||||||||||| | ||||||||    
T  51807189 atacaacttacttgtgataatgtacagttgatttgcttgcaatttgtgaaaataactttggtgaagattggagagaaattgtgaattttggagaagtttt 51807090  T
Q  199 ggaaa 203  Q
    |||||    
T  51807089 ggaaa 51807085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 20917770 - 20917957
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||        ||||||| |||||||||||| |||||| || ||||| |||||||    
T  20917770 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaaataaacctaaacaaactaacat-atcattaagatgattg 20917868  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 188  Q
    | ||||||||||| |||||||||||  ||||||||||||||||||||||||   | |||||||||||||||||| || ||| |||||||    
T  20917869 atacaacttacttgtgataatgtgcgattgatttgcttgcaattcgtgaaaatggctttggtgaagattggagagaaattgagaatttt 20917957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 20926732 - 20926919
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||        ||||||| |||||||||||| |||||| || ||||| |||||||    
T  20926732 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaaataaacctaaacaaactaacat-atcattaagatgattg 20926830  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 188  Q
    | ||||||||||| |||||||||||  ||||||||||||||||||||||||   | |||||||||||||||||| || ||| |||||||    
T  20926831 atacaacttacttgtgataatgtgcgattgatttgcttgcaattcgtgaaaatggctttggtgaagattggagagaaattgagaatttt 20926919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 49196200 - 49196388
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||         |||||| |||||||||||| ||||||||| |||||| ||||||    
T  49196200 aaattgtcaattttaaaatcaaccttaaccacatgcaaactactctaatttttttttaaaaataaacctaaacaaactaacattatcattaaagtgattg 49196299  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaatttt 188  Q
    | ||||||||||| |||||||||||||||||||| |||||||||||||||| | || ||||||||||||| |||| || ||| |||||||    
T  49196300 atacaacttacttgtgataatgtgcagttgattttcttgcaattcgtgaaa-atgactttggtgaagattagagagaaattgagaatttt 49196388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 48563263 - 48563112
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaa--aaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||           ||||| |||||||||||| ||||||||| ||||||||||||    
T  48563263 aaattgtcaattttaaaatcaaccttaaccacatgcaaactactctaatttttttttttaaaataaacctaaacaaactaacattatcattaaaatgatt 48563164  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48563163 gatacaacttacttatgataatgtgcagttgatttgcttgcaatttgtgaaa 48563112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 44230033 - 44229885
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| |         ||| | |||||||||||| ||||||||| ||||||||||||||    
T  44230033 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctgatttttttttaaa-taaacctaaacaaactaacattatcattaaaatgattga 44229935  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
     ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  44229934 tacaacttacttgtgataatgtgcaattgatttgcttgcaattcgtgaaa 44229885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 48888997 - 48888867
Alignment:
Q  59 aaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tt 157  Q
    |||| ||| |||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | || ||    
T  48888997 aaataaacttaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa-atgactt 48888899  T
Q  158 tggtgaagattggagaaaatttgtgaattttg 189  Q
    |||||||||||||| | |||||| ||| ||||    
T  48888898 tggtgaagattggaaagaatttgagaagtttg 48888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 2647891 - 2647816
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||    
T  2647891 gttgatttgcttgcaattcgtgaaagaagatttggcgaagattggagagaaattgagaattttgtgaagttttgga 2647816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 42806008 - 42806107
Alignment:
Q  2 aattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa---nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||          ||||||| ||| |||||||| ||||||||| ||||||||||||    
T  42806008 aattatcaattttaaaatcaaccctaaccacatacaaactactctaatttttcttttaaaaaataaacataaacaaactaacattatcattaaaatgatt 42806107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 48889063 - 48889016
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa 48  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||    
T  48889063 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaa 48889016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 42807498 - 42807572
Alignment:
Q  114 tgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 188  Q
    ||||||||||| |||||||||||||||||| ||||||   | |||||||||||||||||| || ||| |||||||    
T  42807498 tgataatgtgcggttgatttgcttgcaatttgtgaaaatggctttggtgaagattggagagaaattgagaatttt 42807572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 34048953 - 34049022
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  34048953 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 34049022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 46402255 - 46402324
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  46402255 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 46402324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 49141047 - 49140978
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  49141047 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 49140978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 54389676 - 54389744
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaag 194  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| |||||||||    
T  54389676 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaag 54389744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 43211824 - 43211587
Alignment:
Q  2 aattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattgac 101  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||    
T  43211824 aattgtcaattttaaaatcaaccctaagcacatacaaactactctaattttttaaaaaaatcaaccaaaacaaattaacattatgattaaaatgattgac 43211725  T
Q  102 acaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43211724 acaacttacttgtggtaatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgaa 43211625  T
Q  202 aaatggggaagtctggttctgcattctggtttagttca 239  Q
    |||||||||||||||||||| | |||||||||||||||    
T  43211624 aaatggggaagtctggttctacgttctggtttagttca 43211587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 41249826 - 41250015
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||| |||||||||| || |||||||||||||        |||||||||||||||||||||||||||||| |||||||||||||    
T  41249826 aaattgtcaattttaaaatctaccctaaccacatgcaaactactctaatttttaaaaaaaaatcaacctaaacaaattaacattatcattaaaatgattg 41249925  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||||||||||||    
T  41249926 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgtgaattttg 41250015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 45064561 - 45064374
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  45064561 aaattgtcaattttgaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 45064462  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattt 187  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||    
T  45064461 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattt 45064374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 39938969 - 39939158
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||| ||||||||||||||||||||||||| ||  ||||||||||||        |||||||||||||||||||||||||||||| |||||||||||||    
T  39938969 aaattatcaattttaaaatcaaccctaaccacatgtaaactactctaattttttttaaaaaatcaacctaaacaaattaacattatcattaaaatgattg 39939068  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||||||||||   || ||||||||||||||||| || ||| ||||||||    
T  39939069 acacaacttacttgtgataatgtgcaattgatttgctttcaattcgtgaaaatggacttggtgaagattggagagaaattgagaattttg 39939158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 34822770 - 34822961
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn--aaaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||         ||||||| |||||||||||| ||||||||| ||||||||||||    
T  34822770 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaaataaacctaaacaaactaacattatcattaaaatgatt 34822869  T
Q  99 gacacaactta--cttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 188  Q
    || ||||||||  ||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| || ||| |||||||    
T  34822870 gatacaacttatacttgtgataatgtgcagttaatttgcttgcaattcgtgaaaaaagttttggtgaagattggagagaaattgagaatttt 34822961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 15036481 - 15036668
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaa-tcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||       |||||| | |||||||||||||||||||||  |||||||||||||    
T  15036481 aaattgtcaattttgaaatcaaccctaaccacatacaaaccactctaatttttttaaaaaaataaacctaaacaaattaacattaacattaaaatgattg 15036580  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattt 187  Q
    |||||||||| || |||||||||||| ||||||||||||||||||| ||||   |||||||||||||||||||| || ||| ||||||    
T  15036581 acacaacttatttgtgataatgtgcacttgatttgcttgcaattcgcgaaaatggatttggtgaagattggagagaaattgagaattt 15036668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 40077003 - 40077174
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||        ||||||| |||||||||||| ||||||||| |||||||||||||    
T  40077003 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattg 40077102  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattgga 171  Q
    | ||||||||||| |||||||||||| ||||||||||||||||||||||||   | |||| |||||||||||    
T  40077103 atacaacttacttctgataatgtgcacttgatttgcttgcaattcgtgaaaatggctttgttgaagattgga 40077174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 39601967 - 39601834
Alignment:
Q  56 aaaaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga 155  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    |    
T  39601967 aaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatgaa 39601868  T
Q  156 tttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||| |||||||||||| || ||| ||||||||    
T  39601867 tttggcgaagattggagagaaattgagaattttg 39601834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 39846739 - 39846931
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn----aaaaaatcaacctaaacaaattaacattatgattaaaatga 96  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||            ||||||| |||||||||||| ||||||||| ||||||||||    
T  39846739 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctattttttttttataaaaaataaacctaaacaaactaacattatcattaaaatga 39846838  T
Q  97 ttgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    |||| ||||||||||| |||||||||||| ||| ||||||||||||| ||||||   | |||||||||||||||||| || ||||||||||||    
T  39846839 ttgatacaacttacttgtgataatgtgcaattggtttgcttgcaatttgtgaaaatggctttggtgaagattggagagaaattgtgaattttg 39846931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 42485358 - 42485479
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  42485358 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 42485457  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| |||||| ||||||||    
T  42485458 tggagagaatttgagaattttg 42485479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 39252331 - 39252156
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna----aaaaatcaacctaaacaaattaacattatgattaaaatga 96  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||            ||||||||||||||||||||||||||||  ||||||||||    
T  39252331 aaattgtcaattttaaaatcaacc-taaccacatacaaactactctaattttttttttttaaaaatcaacctaaacaaattaacattaacattaaaatga 39252233  T
Q  97 ttgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggaga 173  Q
    |||||||||||||||| |||||| | ||| ||||||||||||||||||||||||    |||||||||||||||||||    
T  39252232 ttgacacaacttacttgtgataacgcgcacttgatttgcttgcaattcgtgaaaatgaatttggtgaagattggaga 39252156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 25864692 - 25864880
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||         |||||| |||||||||||| ||||||||| ||||||||||||     
T  25864692 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatatttttttaaaaataaacctaaacaaactaacattatcattaaaatgatta 25864791  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaatttt 188  Q
    | ||||||||||| |||||||||| |||||||||| ||||||||||||||| | || ||||||||||||| |||| || ||| |||||||    
T  25864792 atacaacttacttgtgataatgtgtagttgatttgattgcaattcgtgaaa-atgactttggtgaagattagagagaaattgagaatttt 25864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 43188369 - 43188181
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||         |||||| |||||||||||| ||||||||| |||||||||||||    
T  43188369 aaattgtcaattttaaaatcaaccataaccacatgcaaactactctaatttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattg 43188270  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaatttt 188  Q
    | ||||||||||| ||| ||| ||||||||||||||||||||||| ||||| | || |||||||||||||||||| || ||| |||||||    
T  43188269 atacaacttacttgtgacaatatgcagttgatttgcttgcaattcttgaaa-atgactttggtgaagattggagagaaattgagaatttt 43188181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 35026749 - 35026638
Alignment:
Q  58 aaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatt 157  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||    |||    
T  35026749 aaaatcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgtagttaatttgcttgcaattcgtgaaaatgaatt 35026650  T
Q  158 tggtgaagattg 169  Q
    ||||||||||||    
T  35026649 tggtgaagattg 35026638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 489449 - 489570
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  489449 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 489548  T
Q  168 tggagaaaatttgtgaattttg 189  Q
     ||||| ||||||  |||||||    
T  489549 cggagagaatttgaaaattttg 489570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 5304010 - 5304112
Alignment:
Q  87 attaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatt 186  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||   | |||||||||||||||| | |||||| ||| |    
T  5304010 attaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggctttggtgaagattggaaagaatttgagaagt 5304109  T
Q  187 ttg 189  Q
    |||    
T  5304110 ttg 5304112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2984442 - 2984354
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgatt 89  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||       ||||| | |||||||||||| |||||| ||||||    
T  2984442 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttaaaaattaaacctaaacaaactaacataatgatt 2984354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39602035 - 39601988
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa 48  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39602035 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaa 39601988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 486250 - 486181
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  486250 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 486181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5303974 - 5304004
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaacca 31  Q
    |||||||||||||||||||||||||||||||    
T  5303974 aaattgtcaattttaaaatcaaccctaacca 5304004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 45128005 - 45127937
Alignment:
Q  64 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatt 132  Q
    |||||||||||| |||||||| ||||||| ||||| |  | |||||||| |||||||||| || |||||    
T  45128005 aacctaaacaaactaacattaagattaaattgattaatgctacttacttgtgataatgtggagatgatt 45127937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 39947919 - 39947680
Alignment:
Q  2 aattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaa--tcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||       ||||||  |||||||||||| |||||||||||||||||||||||||    
T  39947919 aattgtcaattttaaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaaatcaacctaaacatattaacattatgattaaaatgattg 39947820  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttg 199  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39947819 acacaacttacttgtgataatgtgccgttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttatgaattttgtgaagttttg 39947720  T
Q  200 gaaaatggggaagtctggttctgcattctggtttagttca 239  Q
    ||||||||| |||||||||||||| |||| ||||||||||    
T  39947719 gaaaatgggaaagtctggttctgcgttctagtttagttca 39947680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 28468961 - 28468772
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  ||| |||||||||    
T  28468961 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattcaaatgattg 28468862  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||||    
T  28468861 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattttg 28468772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 21998510 - 21998323
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  21998510 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 21998411  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattt 187  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||    
T  21998410 acacaacttacttgtgataatgtacaattgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattt 21998323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 7185349 - 7185159
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna--aaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||           |||||||||||||||||||| |||||||  |||||||| |||    
T  7185349 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctatttttttttttaaaaatcaacctaaacaaatcaacattaacattaaaattatt 7185250  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||||    
T  7185249 gacacaacttacttgtgataatgcgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattttg 7185159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45428911 - 45428678
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna--aaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||||          ||||||||||||||||||||||||||||  ||||||||||||    
T  45428911 aaattgtcattttttaaatcaaccctaaccacatacaaactactctaattttttttttaaaaatcaacctaaacaaattaacattaacattaaaatgatt 45428812  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagtttt 198  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||| ||||||| |||| || |||| || ||||  ||| |||    
T  45428811 gacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggagaagatttgagagaaattgttaaatttgaaaaggttt 45428712  T
Q  199 ggaaaatggggaagtctggttctgcattctggtt 232  Q
     | ||||| | |  ||||||||||| ||||||||    
T  45428711 tggaaatgagaagttctggttctgcgttctggtt 45428678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 45137185 - 45137374
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||         |||||| |||||||||||| ||||| ||| |||||||||||||    
T  45137185 aaattgtcaattttaaaatcaaccttaaccacatgcaaactactctaatttttttttaaaaataaacctaaacaaactaacactatcattaaaatgattg 45137284  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    | ||||||||||| |||||||||||||||||||||||||||||| ||||||   | |||||||||||||||||| || ||||||||||||    
T  45137285 atacaacttacttgtgataatgtgcagttgatttgcttgcaatttgtgaaaatggctttggtgaagattggagagaaattgtgaattttg 45137374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 32956107 - 32956258
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn--aaaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||         |||||||||||||||||||||||||||||  ||||||||||||    
T  32956107 aaattgtcaattttaaaatcaacccaaaccacatacaaactactctaattttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgatt 32956206  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    | |||||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  32956207 ggcacaacttacttgtgataatgtgcagttgatttgcttgctatttgtgaaa 32956258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 25965074 - 25964944
Alignment:
Q  58 aaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatt 157  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||   | ||    
T  25965074 aaaataaacctaaacaaactaacattatgattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggctt 25964975  T
Q  158 tggtgaagattggagaaaatttgtgaatttt 188  Q
    |||||||||||||||| || ||| |||||||    
T  25964974 tggtgaagattggagagaaattgagaatttt 25964944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 42505582 - 42505703
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  42505582 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 42505681  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| ||||||  |||||||    
T  42505682 tggagagaatttgaaaattttg 42505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 17420887 - 17420757
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||| |||||||| |||||||||||||||| || |||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  17420887 aaattctcaattttgaaatcaaccctaaccacatgcaaactactctaatttttctaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 17420788  T
Q  100 acacaacttacttatgataatgtgcagttga 130  Q
    ||||||||||||| |||||||||||| ||||    
T  17420787 acacaacttacttgtgataatgtgcacttga 17420757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25965140 - 25965094
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactcta 47  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||    
T  25965140 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactcta 25965094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 3938052 - 3937983
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  3938052 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 3937983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 17424005 - 17424074
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  17424005 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 17424074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 43982072 - 43982141
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  43982072 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 43982141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 10517300 - 10517077
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  10517300 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaatttttttaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 10517201  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 200  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  10517200 cacagcttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttg---------tgaagttttgg 10517110  T
Q  201 aaaatggggaagtctggttctgcattctggttt 233  Q
    ||||| ||||||||||||||||| |||||||||    
T  10517109 aaaatagggaagtctggttctgcgttctggttt 10517077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 34738686 - 34738495
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna---aaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||           ||||||||||||||||||||||||||||| |||||||||||    
T  34738686 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttttaaaaatcaacctaaacaaattaacattatcattaaaatgat 34738587  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||    
T  34738586 tgacacaacttacttgtgataatgtgcagatgatttgcttgcaattcgtgaaaatagatttggtgaagattggagagaaattgtgaattttg 34738495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 17835396 - 17835208
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||        ||||||||||| |||||||||||||||||  |||||||||||||    
T  17835396 aaattgtcaattttaaaatcaaccttaaccacatacaaactactctaatttttttaaaaaaatcaacataaacaaattaacattaacattaaaatgattg 17835297  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    | ||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||||    
T  17835296 a-acaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattttg 17835208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 47776654 - 47776449
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn--aaaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||         ||||||| |||||||||||| ||||||||| ||||||||||||    
T  47776654 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaaataaacctaaacaaactaacattatcattaaaatgatt 47776555  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaatttt-gtgaagtt 196  Q
    || ||| ||||||| |||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||| || | ||||||||| | ||||||    
T  47776554 gatacaccttacttgtgataatgtgcagttgatttgcttgcaatttgtgaaa-atgactttggtgaagattggagagaaatggtgaattttggagaagtt 47776456  T
Q  197 ttggaaa 203  Q
    |||||||    
T  47776455 ttggaaa 47776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39460848 - 39460698
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||        ||||||| |||||||||||| ||||||||| |||||||||||||    
T  39460848 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattg 39460749  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39460748 atacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa 39460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27453372 - 27453576
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaa-aaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||| ||||||| || |||||||||||||          ||||| |||||||||||| ||||||||| |||||||||||||    
T  27453372 aaattgtcaattttgaaatcaactctaaccacatgcaaactactctaattttttttttaaaataaacctaaacaaactaacattatcattaaaatgattg 27453471  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg-tgaagtttt 198  Q
    | ||||||||||| |||||||||||| ||||||||||||||||| ||||||   | |||||||||||||||||| || ||||||||||||  ||||||||    
T  27453472 atacaacttacttgtgataatgtgcaattgatttgcttgcaatttgtgaaaatggctttggtgaagattggagagaaattgtgaattttgaagaagtttt 27453571  T
Q  199 ggaaa 203  Q
    |||||    
T  27453572 ggaaa 27453576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 47672838 - 47672988
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||         |||||| |||||||||||| ||||||||| |||||||||||||    
T  47672838 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactataatttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattg 47672937  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47672938 atacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa 47672988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 37340624 - 37340435
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaa-tcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||| |||||||| || ||||||||| |||       |||||| | |||||||||||| |||||||||  ||||||||||||    
T  37340624 aaattgtcaattttaaaatcaatcctaaccacatccaaactactataatttttttaaaaaaataaacctaaacaaactaacattattgttaaaatgattg 37340525  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    | ||||||||||| ||||||||||| |||||||||||||||||||||||||   | |||||||||||||||| | |||||| ||| ||||    
T  37340524 atacaacttacttgtgataatgtgctgttgatttgcttgcaattcgtgaaaatggctttggtgaagattggaaagaatttgagaagtttg 37340435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 36977918 - 36977736
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn---aaaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||||||||||||||||||||||||||||| || ||||||||||  |          ||||||| |||||||||||| ||||||||| |||||||||||    
T  36977918 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactcagattttttttaaaaaaaataaacctaaacaaactaacattatcattaaaatgat 36977819  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttg 180  Q
    ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||   | |||||||||||||||| | ||||||    
T  36977818 tgatacaacttacttgtgataatgtacagttgatttgcttgcaattcgtgaaaatggctttggtgaagattggaaagaatttg 36977736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 15074048 - 15074169
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||   ||||||||||||||    
T  15074048 taaacaaattaatattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttacaattcgtgaaaatggatttggtgaagat 15074147  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| || ||| ||||||||    
T  15074148 tggagagaaattgagaattttg 15074169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 42507847 - 42507968
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  ||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  42507847 taaacaaattaacattaacattaaaatgtttgacacaagttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 42507946  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| || ||| ||||||||    
T  42507947 tggagagaaattgagaattttg 42507968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 9494616 - 9494728
Alignment:
Q  57 aaaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagat 156  Q
    |||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||   | |    
T  9494616 aaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttggaattcgtgaaaatggct 9494715  T
Q  157 ttggtgaagattg 169  Q
    |||||||||||||    
T  9494716 ttggtgaagattg 9494728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 15070669 - 15070595
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgg 200  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||| || ||| ||||||||||||| |||||    
T  15070669 gttgatttgctcgcaattcgtgaaagaagatttggcgaagatttgagagaaattgagaattttgtgaagatttgg 15070595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 42504734 - 42504692
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagatt 168  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  42504734 gttgatttgcttgcaattcgtgaaagaagatttggcgaagatt 42504692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 9367916 - 9367848
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaag 194  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| |||||||||    
T  9367916 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaag 9367848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9494548 - 9494595
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa 48  Q
    ||||| ||||||||||||||||||| ||||| || |||||||||||||    
T  9494548 aaattttcaattttaaaatcaacccaaaccacatgcaaactactctaa 9494595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 17741269 - 17741360
Alignment:
Q  59 aaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    |||| |||||||||||| |||||||| ||||| ||||| | |  | |||||||| ||||||||||  | ||||| ||||| |||||||||||    
T  17741269 aaatgaacctaaacaaactaacattaagattacaatgactaatgctacttacttttgataatgtggggatgattggcttgtaattcgtgaaa 17741360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 7757644 - 7757455
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  7757644 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 7757545  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||| ||||||||    
T  7757544 acacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatagatttggtgaagattggagagaaattgagaattttg 7757455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14442 - 14681
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  14442 aaattttcaattttgaaatcaaccctaaccacatacaaactactctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 14541  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtga-agtttt 198  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||| || ||| ||||||||  |  |||||    
T  14542 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttgttgaagattggagagaaattgagaattttgaaattgtttt 14641  T
Q  199 ggaaaatggggaagtctggttctgcattctggtttagttca 239  Q
    || ||||||| |  ||||||||||| |||||||||||||||    
T  14642 gg-aaatgggaagttctggttctgcgttctggtttagttca 14681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 8580258 - 8580445
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  8580258 aaattgtcaattttgaaatcaaccctaaccacatacaaactactctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 8580357  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattt 187  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||    
T  8580358 acacaacttacttgtgataatgtgcacttggtttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattt 8580445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 28876963 - 28876774
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  28876963 aaattctcaattttgaattcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 28876864  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| ||||||||  || ||||||||||||||||||||||||   ||||||| |||||||||||| || ||| ||||||||    
T  28876863 acacaacttacttgtgataatggccacttgatttgcttgcaattcgtgaaaatggatttggggaagattggagagaaattgagaattttg 28876774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 19228425 - 19228614
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaa-tcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||        |||||| | |||||||||||| ||||||||| |||||||||||||    
T  19228425 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactatatttttttaaaaaaaataaacctaaacaaactaacattatcattaaaatgattg 19228524  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaattttg 189  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| | |||||| ||| ||||    
T  19228525 atacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa-atgattttggtgaagattggaaagaatttgagaagtttg 19228614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 512525 - 512714
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||          |||||| |||||||||||| ||||||||| |||||||||||||    
T  512525 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctattttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattg 512624  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    | ||||||||||| ||||||||| ||||||||||||||||||||| |||||   | |||||||||||||||| | |||||| ||| ||||    
T  512625 atacaacttacttgtgataatgtacagttgatttgcttgcaattcatgaaaatggctttggtgaagattggaaagaatttgagaagtttg 512714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 28241619 - 28241740
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  28241619 taaacaaattaacattaacattaaaatgattggtacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 28241718  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| |||||| ||||||||    
T  28241719 tggagagaatttgagaattttg 28241740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 38968417 - 38968235
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna---aaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||           |||||  ||||| |||||| ||||||||| |||||||||||    
T  38968417 aaattgtcaattttaaaataaaccctaaccacatgcaaactactctaatttttttttttaaaaagaaaccttaacaaactaacattatcattaaaatgat 38968318  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttg 180  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| | ||||||    
T  38968317 tgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa-atgactttggtgaagattggaaagaatttg 38968235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42942239 - 42942383
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn--aaaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||         ||||||| |||||||||||| ||||||||| ||||||||||||    
T  42942239 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaaataaacctaaacaaactaacattatcattaaaatgatt 42942338  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaatt 143  Q
    ||  |||||||||| ||||||||||| ||||||||||||||||||    
T  42942339 gatgcaacttacttgtgataatgtgcggttgatttgcttgcaatt 42942383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 42537405 - 42537317
Alignment:
Q  58 aaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgt 146  Q
    ||||| ||||||||||||  |||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  42537405 aaaataaacctaaacaaaccaacattatcattaaaatgattgatacaacttgcttgtgataatgtgcagttgatttgcttgcaattcgt 42537317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 28880202 - 28880277
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  28880202 gttgatttgcatgcaattcgtgaaataagatttggcgaagattggagaaaaattgagaattttgtgaagttttgga 28880277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 30708778 - 30708859
Alignment:
Q  120 tgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||| |||||||||| | |||||||||||||||||||||| |||||||||||| || ||| ||||||||| ||||||||||    
T  30708778 tgtgccgttgatttgcctccaattcgtgaaagaagatttggcgaagattggagagaaattgagaattttgtaaagttttgga 30708859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 8702040 - 8702126
Alignment:
Q  64 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    ||||||||||||||||||||| ||||  ||||||| | |  |||||||| ||||||||||  | |||||  ||||||||||||||||    
T  8702040 aacctaaacaaattaacattaagattgcaatgattaatagtacttacttgtgataatgtggggatgattaacttgcaattcgtgaaa 8702126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 19037670 - 19037601
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||  ||||||| |||| || ||| ||| ||||||||||    
T  19037670 gttgatttgctcgcaattcgtgaaagaagaattgacgaagatttgagagaacttgagaactttgtgaagt 19037601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42537469 - 42537422
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa 48  Q
    ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  42537469 aaattgtcaattttaaaattaaccctaacaacatgcaaactactctaa 42537422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 2425528 - 2425674
Alignment:
Q  89 taaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 188  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2425528 taaaatgattgacacaacttacttgtgataatgcgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 2425627  T
Q  189 gtgaagttttggaaaatggggaagtctggttctgcattctggtttagt 236  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  2425628 gtgaagttttggaaaatggggaagtccggtt-tgcgttctggtttagt 2425674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 22524446 - 22524258
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||| ||||||||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||||| ||||||||||||||    
T  22524446 aaattatcaattttaaaatcaaccctaaccacatgcaaaccactctaatttttttaaaaaatcaacctaaacaaattaacattatcattaaaatgattga 22524347  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||||||    
T  22524346 cacaacttacttgtgataatttgcagttgatttgcttgcaattcgtgaaaatcgatttggtgaagattggagagaatttgagaattttg 22524258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 29622177 - 29622366
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  29622177 aaattctcaattttgaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 29622276  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||||    
T  29622277 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattttg 29622366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 52802451 - 52802275
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaa--tcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||       ||||||  |||||||||||||||||||||||| ||||||||||||    
T  52802451 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttaaaaaaaatcaacctaaacaaattaacattatcattaaaatgatt 52802352  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaa 175  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  |  |||||||| |||||||||||    
T  52802351 gacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaataactttggtgacgattggagaaa 52802275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 35258626 - 35258814
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||        |||||| |||||||||||| ||||||||| ||||||||||||||    
T  35258626 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaataaacctaaacaaactaacattattattaaaatgattga 35258725  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
     ||||||||||| |||||||||||||||||| |||||||||||| |||||  || |||||||||||||||| | |||||| ||| ||||    
T  35258726 tacaacttacttgtgataatgtgcagttgatatgcttgcaattcatgaaaatagctttggtgaagattggaaagaatttgagaagtttg 35258814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 47502635 - 47502431
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||        ||||||| |||||||||||| ||||||||| |||||||||||||    
T  47502635 aaattgtcaattttaaaatcaactctaaccacatgcaaactactctaattttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattg 47502536  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaatttt-gtgaagttt 197  Q
    | ||||||||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||||||||||||| || ||||||||||| | |||||||    
T  47502535 atacaacttacttgtgataatgtgcagttgatttgtttgcaattcgt-aaaaatgattttggtgaagattggagagaaattgtgaattttggagaagttt 47502437  T
Q  198 tggaaa 203  Q
    ||||||    
T  47502436 tggaaa 47502431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 30890314 - 30890193
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  30890314 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 30890215  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| |||||| ||||||||    
T  30890214 tggagagaatttgagaattttg 30890193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23275857 - 23276050
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaa-----aaaatcaacctaaacaaattaacattatgattaaaatg 95  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||              ||||| |||||||||||| ||||||||| |||||||||    
T  23275857 aaattgtcaatttaaaaatcaaccctaaccacatgcaaactactctaattttttttttttttaaaataaacctaaacaaactaacattatcattaaaatg 23275956  T
Q  96 attgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| | || |||||||||||||||| | |||||| ||| ||||    
T  23275957 attgatacaacttacttgtgataacgtgcagttgatttgcttgcaattcgtgaaa-atgactttggtgaagattggaaagaatttgagaagtttg 23276050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 11183501 - 11183318
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa----nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatga 96  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||              |||| |||||||||||| |||||| || |||||||| |    
T  11183501 aaattgtcaattttaaaatcaactctaaccacatgcaaactactctaatttttcttttttttaaataaacctaaacaaactaacataatcattaaaataa 11183402  T
Q  97 ttgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttg 180  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||   | |||||||||||||||| | ||||||    
T  11183401 ttgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaattgctttggtgaagattggaaagaatttg 11183318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 19925001 - 19924888
Alignment:
Q  76 ttaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaa 175  Q
    |||||||||  |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||   |||||||||||||||||||| |    
T  19925001 ttaacattaacattaaaatgattgacacaacttacttgtgataatgcgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagaga 19924902  T
Q  176 atttgtgaattttg 189  Q
    | ||| ||||||||    
T  19924901 aattgagaattttg 19924888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 51321034 - 51320854
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||         |||| | |||||||||||| ||||||||| ||||||||||||      
T  51321034 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctatttttttttaaaa-taaacctaaacaaactaacattatcattaaaatgattat 51320936  T
Q  101 ca--caacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttg 180  Q
     |  |||||||||| |||||||||||||||||||||||| ||||||||||||   | |||||||||||||||| | ||||||    
T  51320935 tattcaacttacttgtgataatgtgcagttgatttgcttccaattcgtgaaaatggttttggtgaagattggaaagaatttg 51320854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2425128 - 2425224
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  2425128 aaattatcaattttaaaatcaactctaaccacatacaaactactctaatttttttaaaaaatcaacctaaacaaattaacattatgattaaaatgat 2425224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 19527296 - 19527408
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaa-aaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||          ||||||||| |||||||||||||||||| |||||||||||||    
T  19527296 aaattgtcaattttaaaatcaaccataaccacatgcaaactactctaattttttttttaaaatcaacttaaacaaattaacattatcattaaaatgattg 19527395  T
Q  100 acacaacttactt 112  Q
    |||||||||||||    
T  19527396 acacaacttactt 19527408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 45825196 - 45825034
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||        |||||| |||          ||||||||| ||||||||||||||    
T  45825196 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaataaac----------taacattatcattaaaatgattga 45825107  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggaga 173  Q
     ||||||||||| ||||||| |||  |||||||||| ||||||||||||| | || ||||||||||||||||||    
T  45825106 tacaacttacttgtgataatatgcgattgatttgctggcaattcgtgaaa-atgattttggtgaagattggaga 45825034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 31783481 - 31783658
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-----nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatg 95  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||            ||||||| |||||||||||||||||||||  |||||||||    
T  31783481 aaattgtcaattttaaaatcaaccctaaccacatacaaactactctaattttttttttataaaaaataaacctaaacaaattaacattaacattaaaatg 31783580  T
Q  96 attgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||                |||||||| ||||||||||||||||||||||||   |||||||||||||||| ||| || ||| ||||||||    
T  31783581 attgac----------------aatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattgaagagaaattgagaattttg 31783658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 13636327 - 13636252
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||| || ||| | | ||||||||||||||||    
T  13636327 gttgatttgctcgcaattcgtgaaagaagatttggcgaagatttgagagaaattgagtagtttgtgaagttttgga 13636252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 11196196 - 11196153
Alignment:
Q  5 tgtcaattttaaaatcaaccctaaccaaatacaaactactctaa 48  Q
    ||||||||||||||||||||||||||| || |||||||||||||    
T  11196196 tgtcaattttaaaatcaaccctaaccacatgcaaactactctaa 11196153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 50275054 - 50274865
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna-aaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||         |||||| |||||||||||||||||||||| |||||||||||||    
T  50275054 aaattgtcaattttaaaattaaccctaaccacatgcaaactactctaatttttttttaaaaattaacctaaacaaattaacattatcattaaaatgattg 50274955  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| || ||||||||||||    
T  50274954 acacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgtgaattttg 50274865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 40358033 - 40358222
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  40358033 aaattctcaattttgaaatcaaccctaaccacatacaaactactctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 40358132  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||||    
T  40358133 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattttg 40358222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 21022641 - 21022814
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaa-aatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| |        |||| |||||||||||||||||||||||||  |||||||||||||    
T  21022641 aaattgtcaattttgaaatcaaccctaaccacatacaaactactcaatttttttaaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 21022740  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggaga 173  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||    
T  21022741 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaga 21022814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 55407540 - 55407732
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaa-----aaaatcaacctaaacaaattaacattatgattaaaatg 95  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||              ||||| |||||||||||| ||||||||| |||||||||    
T  55407540 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttttttttaaaataaacctaaacaaactaacattatcattaaaatg 55407639  T
Q  96 attgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 188  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||   | |||||||||||||||||| || ||| |||||||    
T  55407640 attgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggttttggtgaagattggagagaaattgagaatttt 55407732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 1308934 - 1309055
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  1308934 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 1309033  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| |||||| ||||||||    
T  1309034 tggagagaatttgagaattttg 1309055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 51683522 - 51683332
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna---aaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||           |||||| |||||||||||| ||||||||| |||||||||||    
T  51683522 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttttaaaaataaacctaaacaaactaacattatcattaaaatgat 51683423  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||| | ||||||||| |||||||||| |||||||||||||||||||||||||| | | |||||||||||||||| | |||||| ||| ||||    
T  51683422 tgatataacttacttgtgataatgtgtagttgatttgcttgcaattcgtgaaa-atggtttggtgaagattggaaagaatttgagaagtttg 51683332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 1089404 - 1089525
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  1089404 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 1089503  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| || ||| ||||||||    
T  1089504 tggagagaaattgagaattttg 1089525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 8109657 - 8109540
Alignment:
Q  56 aaaaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga 155  Q
    ||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    |    
T  8109657 aaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatgaa 8109558  T
Q  156 tttggtgaagattggaga 173  Q
    ||||||||||||||||||    
T  8109557 tttggtgaagattggaga 8109540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 30726561 - 30726682
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  30726561 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 30726660  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| || ||| ||||||||    
T  30726661 tggagagaaattgagaattttg 30726682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 67911 - 67724
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn-aaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||        ||||||| |||||||||||| ||||||| | |||||||||||||    
T  67911 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaaataaacctaaacaaactaacatt-tcattaaaatgattg 67813  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaaga-tttggtgaagattggagaaaatttgtgaatttt 188  Q
    | ||||||||||| ||||||||||| |||||||| |||||||||||||||| | || ||||||||||||| |||| || ||| |||||||    
T  67812 atacaacttacttgtgataatgtgcggttgattttcttgcaattcgtgaaa-atgactttggtgaagatttgagagaaattgagaatttt 67724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 48256324 - 48256505
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnn--aaaaaatcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||         ||||||| ||||||| |||| ||| ||||| ||||||||||||    
T  48256324 aaattgtcaattttaaaattaaccctaaccacatgcaaactactctaattttttttaaaaaaataaacctaagcaaactaatattatcattaaaatgatt 48256423  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttg 180  Q
    || |||| |||||| ||||||||||||||||||||| |||||||||||||||   | |||||||||||||||| | ||||||    
T  48256424 gatacaatttacttgtgataatgtgcagttgatttgtttgcaattcgtgaaaatggctttggtgaagattggaaagaatttg 48256505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 50901800 - 50901657
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||        |||||| |||||||||||| ||||||||| ||||||||||||||    
T  50901800 aaattgtcaattttaaaatcaaccctaaccacatgtaaactactctaattttttttaaaaataaacctaaacaaactaacattatcattaaaatgattga 50901701  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattc 144  Q
      |||||||||| |||||||||||  ||||||||||||||||||    
T  50901700 tgcaacttacttgtgataatgtgcgattgatttgcttgcaattc 50901657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 21538281 - 21538364
Alignment:
Q  67 ctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||  |||||||||||||||||||||||||    
T  21538281 ctaaacaaactaacattatgattaaaatgattgatgcaacttacttgtgataatgtgtggttgatttgcttgcaattcgtgaaa 21538364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 40354775 - 40354692
Alignment:
Q  120 tgtgcagttgatttgcttgcaattcgt-gaaagaag-atttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||| ||||||||||||||||||||| |||||||| |||||| |||||||||||| || ||| ||||||| ||||||||||||    
T  40354775 tgtgccgttgatttgcttgcaattcgtagaaagaagtatttggcgaagattggagagaaattgagaattttttgaagttttgga 40354692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37021836 - 37021936
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa------nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaat 94  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||              ||||||||||||||||||||||||||||| ||||||||    
T  37021836 aaattgtcaattttaaaatcaactctaaccacatacaaactactctaattttattttattttaaaaatcaacctaaacaaattaacattatcattaaaat 37021935  T
Q  95 g 95  Q
    |    
T  37021936 g 37021936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 6178310 - 6178241
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  6178310 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 6178241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 41795556 - 41795487
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  41795556 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 41795487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 49093957 - 49094026
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  49093957 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 49094026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 10753256 - 10753312
Alignment:
Q  67 ctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtg 123  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||| | ||||||||    
T  10753256 ctaaacaaactaacattatgattaaaatgattgatgcaacttacttgtcataatgtg 10753312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 10967025 - 10967081
Alignment:
Q  67 ctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtg 123  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||| | ||||||||    
T  10967025 ctaaacaaactaacattatgattaaaatgattgatgcaacttacttgtcataatgtg 10967081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 37021933 - 37021988
Alignment:
Q  118 aatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggaga 173  Q
    |||||||||||||||||||||| ||||||||||    |||||||||||||||||||    
T  37021933 aatgtgcagttgatttgcttgctattcgtgaaaatgaatttggtgaagattggaga 37021988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 11083832 - 11083918
Alignment:
Q  64 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    |||||||||||| |||||||| ||||  ||||||| |    |||||||| ||||||||||  | ||||| |||||||||||||||||    
T  11083832 aacctaaacaaactaacattaagattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaa 11083918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 41933439 - 41933524
Alignment:
Q  64 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    |||||||||||| |||||||| ||||| | ||||| |  | |||||||| |||||||||| || ||| |||||||||| ||||||||    
T  41933439 aacctaaacaaactaacattaagattacattgattaattctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaa 41933524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 7738 - 7551
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa-nnnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||    
T  7738 aaattgtcaattttgaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattg 7639  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattt 187  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| || ||| ||||||    
T  7638 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagagaaattgagaattt 7551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 18111 - 18251
Alignment:
Q  63 caacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtg 162  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||    
T  18111 caacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtg 18210  T
Q  163 aagattggagaaaatttgtgaattttgtgaagttttggaaa 203  Q
    ||||||||||| || ||||||||||||  || |||||||||    
T  18211 aagattggagagaaattgtgaattttgaaaaattttggaaa 18251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 54733 - 54593
Alignment:
Q  63 caacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtg 162  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||    
T  54733 caacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtg 54634  T
Q  163 aagattggagaaaatttgtgaattttgtgaagttttggaaa 203  Q
    ||||||||||| || ||||||||||||  || |||||||||    
T  54633 aagattggagagaaattgtgaattttgaaaaattttggaaa 54593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 481 - 648
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaa-tcaacctaaacaaattaacattatgattaaaatgattg 99  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||       |||||| |||||||||||||||||||||||      |||||||||    
T  481 aaattgtcaattttgaaatcaaccctaaccacatacaaactactctaattttttaaaaaaaatcaacctaaacaaattaacatta------aaatgattg 574  T
Q  100 acacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggaga 173  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||| ||||||| ||||    
T  575 acacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggagaagatttgaga 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 40855 - 40976
Alignment:
Q  68 taaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagat 167  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  40855 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 40954  T
Q  168 tggagaaaatttgtgaattttg 189  Q
    |||||| || ||| ||||||||    
T  40955 tggagagaaattgagaattttg 40976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 36739 - 36664
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| |||| || ||| ||||||||||||||||||||    
T  36739 gttgatttgctcgcaattcgtgaaagaagatttggcggagatttgagagaaattgagaattttgtgaagttttgga 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 31769021 - 31768877
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaa--tcaacctaaacaaattaacattatgattaaaatgatt 98  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||       ||||||  |||||||||||||||||||||||| ||||||||||||    
T  31769021 aaattgtcgattttaaaatcaaccctaaccacatgcaaactactctaatttttaaaaaaaaaatcaacctaaacaaattaacattatcattaaaatgatt 31768922  T
Q  99 gacacaacttacttatgataatgtgcagttgatttgcttgcaatt 143  Q
    |||||||||||||| |||||||||||| |  ||||||||||||||    
T  31768921 gacacaacttacttgtgataatgtgcaatctatttgcttgcaatt 31768877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 24088535 - 24088687
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnna---aaaaatcaacctaaacaaattaacattatgattaaaatgat 97  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||||            |||||| |||||||||||| ||||||||| |||||||||||    
T  24088535 aaattgtcaattttaaaatcaacactaaccacatgcaaactactctattttttttttttaaaaataaacctaaacaaactaacattatcattaaaatgat 24088634  T
Q  98 tgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
    ||| |||||||| || ||||||| ||| |||||||||||||||||||||||||    
T  24088635 tgatacaacttatttgtgataatttgcggttgatttgcttgcaattcgtgaaa 24088687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 6320371 - 6320470
Alignment:
Q  90 aaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttg 189  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||   | |||||||||||||||| | |||||| ||| ||||    
T  6320371 aaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggctttggtgaagattggaaagaatttgagaagtttg 6320470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 22304976 - 22305051
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||| || ||| | | ||||||||||||||||    
T  22304976 gttgatttgctcgcaattcgtgaaagaagatttggcgaagatttgagagaaattgagtagtttgtgaagttttgga 22305051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6320316 - 6320363
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaa 48  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||    
T  6320316 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaa 6320363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 27639455 - 27639526
Alignment:
Q  130 atttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgga 201  Q
    ||||||| |||||||||||||||||| |||  ||||||| |||| || ||| ||||||||||||||||||||    
T  27639455 atttgctcgcaattcgtgaaagaagaattgacgaagatttgagagaacttgagaattttgtgaagttttgga 27639526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 6204700 - 6204769
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  6204700 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 6204769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 11691667 - 11691736
Alignment:
Q  126 gttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagt 195  Q
    ||||||||||| |||||||||||||||||| |||| ||||||| |||| || ||| ||| ||||||||||    
T  11691667 gttgatttgctcgcaattcgtgaaagaagaattggcgaagatttgagagaacttgagaactttgtgaagt 11691736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 30424240 - 30424296
Alignment:
Q  57 aaaaatcaacctaaacaaattaacattatgatta-aaatgattgacacaacttactt 112  Q
    |||||| |||||| ||||| |||||||||||||| |||||||| |||| ||||||||    
T  30424240 aaaaataaacctacacaaactaacattatgattacaaatgattaacactacttactt 30424296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 8523 - 8374
Alignment:
Q  1 aaattgtcaattttaaaatcaaccctaaccaaatacaaactactctaannnnnnnaaaaaatcaacctaaacaaattaacattatgattaaaatgattga 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||       ||||| | |||||||||||| ||||||||| |||||||| |||||    
T  8523 aaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttaaaaattaaacctaaacaaactaacattatcattaaaataattga 8424  T
Q  101 cacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 150  Q
      |||||||||| ||||||||||  |||||||||||||||||||| ||||    
T  8423 tgcaacttacttgtgataatgtgtggttgatttgcttgcaattcgcgaaa 8374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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