View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6988_high_10 (Length: 242)
Name: NF6988_high_10
Description: NF6988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6988_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 30304649 - 30304872
Alignment:
| Q |
19 |
aacccttattatgtcaactagaatcaagtttctattccctaagaagtttggtggtttggggatcaagaagtcaaacgaagccaatatatctttgttgcaa |
118 |
Q |
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| T |
30304649 |
aacccttattatgtcaactagaatcaagtttctattccctaagaagtttggtggtttggggatcaagaagtcaaacgaagccaatatatctttgttgcaa |
30304748 |
T |
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| Q |
119 |
atttcttagaagatctagatgcaacttatttctaatagataaatcaaggtttttctttttgtaggaaaaaatgactaaaggaattgtcacttggaactta |
218 |
Q |
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| T |
30304749 |
atttcttagaagatctagatgcaacttatttctaatagataaatcaaggtttttctttttgtaggaaaaaatgactaaaggaattgtcacttggaactca |
30304848 |
T |
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| Q |
219 |
atcatcaaagcttgagatgttgtc |
242 |
Q |
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| T |
30304849 |
atcatcaaagcttgagatgttgtc |
30304872 |
T |
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