View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6988_high_3 (Length: 550)
Name: NF6988_high_3
Description: NF6988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6988_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 44094964 - 44095475
Alignment:
| Q |
18 |
gatacaagtttgtgtgcttcaatggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttatttgtgg |
117 |
Q |
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| T |
44094964 |
gatacaagtttgtgtgcttcaatggcttggtccaaggtaaccttaagtacaatatcatggaaggaagaagaagaatctagggttgatagtttatttgtgg |
44095063 |
T |
|
| Q |
118 |
tggttccgatataatggttgcacacatgagggtatggagtttgattgcatgacaattctttgccatgcacaaacaagagacagaaaagaagaaagtatgc |
217 |
Q |
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| T |
44095064 |
tggttccaatataatggttgcacacatgagggtatggagtttgattgcatgacaattctttgccatgcacaaacaagagagagaaaagaagaaagtatgc |
44095163 |
T |
|
| Q |
218 |
aatgcaagagttgaatatgagtttatccatattagaaaatgaagtattgtgcatgttgtgtagcaaaatatttttctataatattatatgggaaaagcta |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
44095164 |
aatgcaagagttgaatatgagtttatccatcttagaaaatgaaatattgtgcatgttgtgtagcaaaatgtttttctataatattatatgggaagagcta |
44095263 |
T |
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| Q |
318 |
ggtgtactataggaatgactaagagaggacttgcttagaaatgtttgcttatgtatgaaattaagtgcaaaggaatggtgctatatataggtcaagtgat |
417 |
Q |
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| T |
44095264 |
ggtg---tataggaattaataagagaggacttgcttatatatgtttgcttatgtatgaaattaagtgcaaaggaatggtgctatatatagatcaagagat |
44095360 |
T |
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| Q |
418 |
ttggcttaggtaggccatacaggtatactaatttgtgggtgttgaagcttaggatataaggcaatagtcatattatcatggaaggtttcacttgcatttc |
517 |
Q |
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| T |
44095361 |
ttggcttaggtaggccatacaggtatactaatttgtgggtgttgaagcttaggatataaggaaatagtcatattatcatggaaggtttcacttgcatttc |
44095460 |
T |
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| Q |
518 |
ctaaagttcttggtg |
532 |
Q |
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| T |
44095461 |
ctaaagttcttggtg |
44095475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 44085390 - 44084953
Alignment:
| Q |
18 |
gatacaagtttgtgtgcttcaatggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttatttgtgg |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085390 |
gatacaagtttgtgagcttcaatggcttggtccaaggtaaccttaagtacaatatcatggaaggaagaagaagaatctagggttgatagtttatttgtgg |
44085291 |
T |
|
| Q |
118 |
tggttccgatataatggttgcacacatgagggtatggagtttgattgcatgacaattctttgccatgcacaaacaagagacagaaaagaagaaagtatgc |
217 |
Q |
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| T |
44085290 |
tggttccaatataatggttgcacacatgagggtatggagtttgattgcatgacaattctttgccatgcacaaacaagagagagaaaagaagaaagtatgc |
44085191 |
T |
|
| Q |
218 |
aatgcaagagttgaatatgagtttatccatattagaaaatgaagtattgtgcatgttgtgtagcaaaatatttttctataatattatatgggaaaagcta |
317 |
Q |
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|||||||||||||||||||||||||| ||| | ||| | || |||||||| ||||| |||||||||||||| |||||||| | | | || || |
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| T |
44085190 |
aatgcaagagttgaatatgagtttatacatgt------atgcaatagtgtgcatg--gtgtatcaaaatatttttctgtaatattacacgag-ggagtta |
44085100 |
T |
|
| Q |
318 |
ggtgtactataggaatgactaagagaggacttg---cttagaaatg--tttgcttatgtatgaaattaagtgcaaaggaatggtgctatatataggtcaa |
412 |
Q |
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| T |
44085099 |
ggtg---tataggaactaacaagagaggatttgatatttaggaatgtatttgcttatgaatgaaattaagtgcaaaggaatggaggtatatataggtcaa |
44085003 |
T |
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| Q |
413 |
gtgatttggcttaggtaggccatacaggtatactaatttgtgggtgttga |
462 |
Q |
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| T |
44085002 |
gagatttggctttggtaggccataaaggtatactaatatgtgggtgttga |
44084953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 44069715 - 44069940
Alignment:
| Q |
18 |
gatacaagtttgtgtgcttcaatggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttatttgtgg |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069715 |
gatacaagtttgtgagcttcaatggcttggtccaaggtaaccttaagtgcaatatcatggaaggaagaagaagaatctagggttgatagtttatttgtgg |
44069814 |
T |
|
| Q |
118 |
tggttccgatataatggttgcacacatgagggtatggagtttgattgcatgacaattctttgccatgcacaaacaagagacagaaaagaagaaagtatgc |
217 |
Q |
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| T |
44069815 |
tggttccaatataatggttgcacacatgagggtatggagtttgattgcatgacaattctttgccatgcacaaacaagagagagaaaagaagaaagtatgc |
44069914 |
T |
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| Q |
218 |
aatgcaagagttgaatatgagtttat |
243 |
Q |
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| T |
44069915 |
aatgcaagagttgaatatgagtttat |
44069940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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